Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29605 and AZOBR_RS29610 are separated by 369 nucleotides AZOBR_RS29610 and AZOBR_RS29615 are separated by 36 nucleotides AZOBR_RS29615 and AZOBR_RS29620 are separated by 11 nucleotides
AZOBR_RS29605: AZOBR_RS29605 - transposase, at 771,947 to 772,924
_RS29605
AZOBR_RS29610: AZOBR_RS29610 - hypothetical protein, at 773,294 to 773,959
_RS29610
AZOBR_RS29615: AZOBR_RS29615 - arginine ABC transporter ATP-binding protein, at 773,996 to 774,751
_RS29615
AZOBR_RS29620: AZOBR_RS29620 - cyclohexadienyl dehydratase precursor, at 774,763 to 775,602
_RS29620
Position (kb) 773
774 Strain fitness (log2 ratio) -2
-1
0
1
2 at 772.563 kb on - strand, within AZOBR_RS29605 at 772.782 kb on + strand, within AZOBR_RS29605 at 772.782 kb on + strand, within AZOBR_RS29605 at 772.996 kb on - strand at 773.047 kb on + strand at 773.065 kb on + strand at 773.065 kb on + strand at 773.065 kb on + strand at 773.065 kb on + strand at 773.065 kb on + strand at 773.065 kb on + strand at 773.065 kb on + strand at 773.065 kb on + strand at 773.065 kb on + strand at 773.066 kb on - strand at 773.066 kb on - strand at 773.066 kb on - strand at 773.066 kb on - strand at 773.066 kb on - strand at 773.066 kb on - strand at 773.066 kb on - strand at 773.066 kb on - strand at 773.066 kb on - strand at 773.066 kb on - strand at 773.068 kb on - strand at 773.068 kb on - strand at 773.379 kb on + strand, within AZOBR_RS29610 at 773.453 kb on - strand, within AZOBR_RS29610 at 773.462 kb on - strand, within AZOBR_RS29610 at 773.522 kb on + strand, within AZOBR_RS29610 at 773.523 kb on - strand, within AZOBR_RS29610 at 773.525 kb on + strand, within AZOBR_RS29610 at 773.526 kb on - strand, within AZOBR_RS29610 at 773.606 kb on + strand, within AZOBR_RS29610 at 773.606 kb on + strand, within AZOBR_RS29610 at 773.606 kb on + strand, within AZOBR_RS29610 at 773.606 kb on + strand, within AZOBR_RS29610 at 773.606 kb on + strand, within AZOBR_RS29610 at 773.606 kb on + strand, within AZOBR_RS29610 at 773.606 kb on + strand, within AZOBR_RS29610 at 773.606 kb on + strand, within AZOBR_RS29610 at 773.607 kb on - strand, within AZOBR_RS29610 at 773.607 kb on - strand, within AZOBR_RS29610 at 773.607 kb on - strand, within AZOBR_RS29610 at 773.607 kb on - strand, within AZOBR_RS29610 at 773.607 kb on - strand, within AZOBR_RS29610 at 773.607 kb on - strand, within AZOBR_RS29610 at 773.607 kb on - strand, within AZOBR_RS29610 at 773.607 kb on - strand, within AZOBR_RS29610 at 773.849 kb on + strand, within AZOBR_RS29610 at 773.849 kb on + strand, within AZOBR_RS29610 at 773.903 kb on + strand at 774.026 kb on + strand at 774.026 kb on + strand at 774.194 kb on + strand, within AZOBR_RS29615 at 774.194 kb on + strand, within AZOBR_RS29615 at 774.194 kb on + strand at 774.195 kb on - strand, within AZOBR_RS29615 at 774.890 kb on - strand, within AZOBR_RS29620 at 774.890 kb on - strand, within AZOBR_RS29620 at 774.949 kb on + strand, within AZOBR_RS29620 at 774.949 kb on + strand, within AZOBR_RS29620 at 774.949 kb on + strand, within AZOBR_RS29620 at 774.950 kb on - strand, within AZOBR_RS29620 at 774.950 kb on - strand, within AZOBR_RS29620 at 774.950 kb on - strand, within AZOBR_RS29620 at 774.950 kb on - strand, within AZOBR_RS29620 at 774.950 kb on - strand, within AZOBR_RS29620
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 772,563 - AZOBR_RS29605 0.63 -1.4 772,782 + AZOBR_RS29605 0.85 +2.1 772,782 + AZOBR_RS29605 0.85 +0.1 772,996 - +0.4 773,047 + +0.1 773,065 + -0.7 773,065 + +0.1 773,065 + -0.1 773,065 + +1.0 773,065 + +1.1 773,065 + +2.1 773,065 + -0.3 773,065 + +0.5 773,065 + +0.2 773,066 - -1.1 773,066 - -1.4 773,066 - -0.8 773,066 - +0.9 773,066 - +0.7 773,066 - +1.4 773,066 - +0.2 773,066 - +0.3 773,066 - +1.0 773,066 - +0.3 773,068 - +1.7 773,068 - -0.2 773,379 + AZOBR_RS29610 0.13 +2.1 773,453 - AZOBR_RS29610 0.24 -2.0 773,462 - AZOBR_RS29610 0.25 +0.1 773,522 + AZOBR_RS29610 0.34 +0.5 773,523 - AZOBR_RS29610 0.34 +1.9 773,525 + AZOBR_RS29610 0.35 +1.1 773,526 - AZOBR_RS29610 0.35 +0.3 773,606 + AZOBR_RS29610 0.47 +1.1 773,606 + AZOBR_RS29610 0.47 +2.1 773,606 + AZOBR_RS29610 0.47 +0.1 773,606 + AZOBR_RS29610 0.47 +0.1 773,606 + AZOBR_RS29610 0.47 +2.1 773,606 + AZOBR_RS29610 0.47 -1.2 773,606 + AZOBR_RS29610 0.47 -0.9 773,606 + AZOBR_RS29610 0.47 -2.3 773,607 - AZOBR_RS29610 0.47 -1.6 773,607 - AZOBR_RS29610 0.47 +0.1 773,607 - AZOBR_RS29610 0.47 -0.2 773,607 - AZOBR_RS29610 0.47 +1.1 773,607 - AZOBR_RS29610 0.47 +0.5 773,607 - AZOBR_RS29610 0.47 +0.5 773,607 - AZOBR_RS29610 0.47 +0.7 773,607 - AZOBR_RS29610 0.47 -0.9 773,849 + AZOBR_RS29610 0.83 +1.2 773,849 + AZOBR_RS29610 0.83 -0.7 773,903 + -0.3 774,026 + +0.3 774,026 + +1.4 774,194 + AZOBR_RS29615 0.26 +0.1 774,194 + AZOBR_RS29615 0.26 -2.1 774,194 + +2.1 774,195 - AZOBR_RS29615 0.26 +2.1 774,890 - AZOBR_RS29620 0.15 -1.6 774,890 - AZOBR_RS29620 0.15 -1.9 774,949 + AZOBR_RS29620 0.22 -2.4 774,949 + AZOBR_RS29620 0.22 -0.0 774,949 + AZOBR_RS29620 0.22 -0.9 774,950 - AZOBR_RS29620 0.22 -0.4 774,950 - AZOBR_RS29620 0.22 +0.9 774,950 - AZOBR_RS29620 0.22 -2.5 774,950 - AZOBR_RS29620 0.22 -1.9 774,950 - AZOBR_RS29620 0.22 -1.0
Or see this region's nucleotide sequence