Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS29570

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS29560 and AZOBR_RS29565 overlap by 4 nucleotidesAZOBR_RS29565 and AZOBR_RS29570 are separated by 25 nucleotides AZOBR_RS29560: AZOBR_RS29560 - isochorismatase, at 756,898 to 757,773 _RS29560 AZOBR_RS29565: AZOBR_RS29565 - 2 3-dihydroxybenzoate-2 3-dehydrogenase, at 757,770 to 758,522 _RS29565 AZOBR_RS29570: AZOBR_RS29570 - antibiotic synthesis protein MbtH, at 758,548 to 758,754 _RS29570 Position (kb) 758 759Strain fitness (log2 ratio) -2 -1 0 1at 758.086 kb on + strand, within AZOBR_RS29565at 758.520 kb on + strandat 758.563 kb on + strandat 758.564 kb on - strandat 758.862 kb on + strandat 758.862 kb on + strandat 758.862 kb on + strandat 758.862 kb on + strandat 758.863 kb on - strandat 758.863 kb on - strandat 758.863 kb on - strandat 758.863 kb on - strandat 758.863 kb on - strandat 758.863 kb on - strandat 758.863 kb on - strandat 759.034 kb on + strandat 759.034 kb on + strandat 759.224 kb on + strandat 759.224 kb on + strandat 759.225 kb on - strandat 759.263 kb on + strandat 759.264 kb on - strandat 759.264 kb on - strandat 759.264 kb on - strandat 759.344 kb on + strandat 759.344 kb on + strandat 759.381 kb on - strandat 759.381 kb on - strandat 759.582 kb on - strandat 759.582 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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758,086 + AZOBR_RS29565 0.42 +0.8
758,520 + +0.6
758,563 + -1.3
758,564 - -1.1
758,862 + -0.1
758,862 + +0.5
758,862 + -0.8
758,862 + +1.0
758,863 - -0.5
758,863 - +0.3
758,863 - +0.9
758,863 - +0.2
758,863 - +0.8
758,863 - -0.6
758,863 - -0.5
759,034 + -1.8
759,034 + +0.6
759,224 + -0.0
759,224 + +0.3
759,225 - +0.8
759,263 + -1.3
759,264 - +1.1
759,264 - -0.3
759,264 - +0.5
759,344 + +0.1
759,344 + +1.6
759,381 - +0.7
759,381 - -1.6
759,582 - +0.3
759,582 - +0.1

Or see this region's nucleotide sequence