Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29555 and AZOBR_RS29560 are separated by 117 nucleotides AZOBR_RS29560 and AZOBR_RS29565 overlap by 4 nucleotides AZOBR_RS29565 and AZOBR_RS29570 are separated by 25 nucleotides
AZOBR_RS29555: AZOBR_RS29555 - enterobactin synthase subunit E, at 755,149 to 756,780
_RS29555
AZOBR_RS29560: AZOBR_RS29560 - isochorismatase, at 756,898 to 757,773
_RS29560
AZOBR_RS29565: AZOBR_RS29565 - 2 3-dihydroxybenzoate-2 3-dehydrogenase, at 757,770 to 758,522
_RS29565
AZOBR_RS29570: AZOBR_RS29570 - antibiotic synthesis protein MbtH, at 758,548 to 758,754
_RS29570
Position (kb) 756
757
758 Strain fitness (log2 ratio) -1
0
1 at 756.166 kb on + strand, within AZOBR_RS29555 at 756.166 kb on + strand, within AZOBR_RS29555 at 756.166 kb on + strand, within AZOBR_RS29555 at 756.311 kb on - strand, within AZOBR_RS29555 at 756.325 kb on + strand, within AZOBR_RS29555 at 756.328 kb on + strand, within AZOBR_RS29555 at 756.329 kb on - strand, within AZOBR_RS29555 at 756.329 kb on - strand, within AZOBR_RS29555 at 756.922 kb on + strand at 756.923 kb on - strand at 756.923 kb on - strand at 757.018 kb on + strand, within AZOBR_RS29560 at 757.018 kb on + strand, within AZOBR_RS29560 at 757.019 kb on - strand, within AZOBR_RS29560 at 757.019 kb on - strand, within AZOBR_RS29560 at 757.033 kb on + strand, within AZOBR_RS29560 at 757.034 kb on - strand, within AZOBR_RS29560 at 757.123 kb on + strand, within AZOBR_RS29560 at 757.351 kb on + strand, within AZOBR_RS29560 at 757.472 kb on - strand, within AZOBR_RS29560 at 758.086 kb on + strand, within AZOBR_RS29565 at 758.520 kb on + strand at 758.563 kb on + strand at 758.564 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 756,166 + AZOBR_RS29555 0.62 +0.2 756,166 + AZOBR_RS29555 0.62 -0.7 756,166 + AZOBR_RS29555 0.62 -0.3 756,311 - AZOBR_RS29555 0.71 +1.0 756,325 + AZOBR_RS29555 0.72 +1.3 756,328 + AZOBR_RS29555 0.72 -0.1 756,329 - AZOBR_RS29555 0.72 +1.3 756,329 - AZOBR_RS29555 0.72 -0.4 756,922 + -1.1 756,923 - +1.6 756,923 - +0.1 757,018 + AZOBR_RS29560 0.14 -0.7 757,018 + AZOBR_RS29560 0.14 +0.6 757,019 - AZOBR_RS29560 0.14 -0.0 757,019 - AZOBR_RS29560 0.14 +0.7 757,033 + AZOBR_RS29560 0.15 -0.0 757,034 - AZOBR_RS29560 0.16 +0.7 757,123 + AZOBR_RS29560 0.26 -0.1 757,351 + AZOBR_RS29560 0.52 -1.6 757,472 - AZOBR_RS29560 0.66 -0.7 758,086 + AZOBR_RS29565 0.42 +0.8 758,520 + +0.6 758,563 + -1.3 758,564 - -1.1
Or see this region's nucleotide sequence