Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS27625

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS27620 and AZOBR_RS27625 are separated by 779 nucleotidesAZOBR_RS27625 and AZOBR_RS27630 overlap by 4 nucleotides AZOBR_RS27620: AZOBR_RS27620 - transcriptional regulator, at 358,833 to 359,735 _RS27620 AZOBR_RS27625: AZOBR_RS27625 - hypothetical protein, at 360,515 to 361,201 _RS27625 AZOBR_RS27630: AZOBR_RS27630 - CoA-transferase, at 361,198 to 362,391 _RS27630 Position (kb) 360 361 362Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 359.777 kb on + strandat 360.398 kb on + strandat 360.399 kb on - strandat 360.515 kb on - strandat 360.981 kb on - strand, within AZOBR_RS27625at 361.894 kb on + strand, within AZOBR_RS27630at 362.152 kb on + strand, within AZOBR_RS27630at 362.153 kb on - strand, within AZOBR_RS27630at 362.153 kb on - strand, within AZOBR_RS27630

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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359,777 + +0.1
360,398 + +0.0
360,399 - -3.8
360,515 - -0.1
360,981 - AZOBR_RS27625 0.68 -1.4
361,894 + AZOBR_RS27630 0.58 -0.5
362,152 + AZOBR_RS27630 0.80 +0.3
362,153 - AZOBR_RS27630 0.80 -0.7
362,153 - AZOBR_RS27630 0.80 -1.5

Or see this region's nucleotide sequence