Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26420

Experiment: 2-pentyl-furan 1.780666667 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS26410 and AZOBR_RS26415 are separated by 14 nucleotidesAZOBR_RS26415 and AZOBR_RS26420 are separated by 30 nucleotides AZOBR_RS26410: AZOBR_RS26410 - amino acid ABC transporter permease, at 70,434 to 71,084 _RS26410 AZOBR_RS26415: AZOBR_RS26415 - ABC transporter permease, at 71,099 to 71,758 _RS26415 AZOBR_RS26420: AZOBR_RS26420 - amino acid deaminase, at 71,789 to 73,087 _RS26420 Position (kb) 71 72 73 74Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 70.799 kb on - strand, within AZOBR_RS26410at 71.178 kb on + strand, within AZOBR_RS26415at 71.178 kb on + strand, within AZOBR_RS26415at 71.178 kb on + strand, within AZOBR_RS26415at 71.200 kb on - strand, within AZOBR_RS26415at 71.200 kb on - strand, within AZOBR_RS26415at 71.217 kb on + strand, within AZOBR_RS26415at 71.460 kb on + strand, within AZOBR_RS26415at 71.461 kb on - strand, within AZOBR_RS26415at 71.473 kb on - strand, within AZOBR_RS26415at 71.592 kb on + strand, within AZOBR_RS26415at 71.808 kb on + strandat 72.450 kb on + strand, within AZOBR_RS26420at 72.451 kb on - strand, within AZOBR_RS26420at 72.451 kb on - strand, within AZOBR_RS26420at 72.451 kb on - strand, within AZOBR_RS26420at 73.444 kb on + strandat 73.444 kb on + strandat 73.444 kb on + strandat 73.445 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
remove
70,799 - AZOBR_RS26410 0.56 -0.1
71,178 + AZOBR_RS26415 0.12 +0.4
71,178 + AZOBR_RS26415 0.12 -1.0
71,178 + AZOBR_RS26415 0.12 -0.2
71,200 - AZOBR_RS26415 0.15 +1.2
71,200 - AZOBR_RS26415 0.15 -0.1
71,217 + AZOBR_RS26415 0.18 +0.8
71,460 + AZOBR_RS26415 0.55 -1.0
71,461 - AZOBR_RS26415 0.55 -0.6
71,473 - AZOBR_RS26415 0.57 +3.4
71,592 + AZOBR_RS26415 0.75 +0.3
71,808 + -0.4
72,450 + AZOBR_RS26420 0.51 +0.3
72,451 - AZOBR_RS26420 0.51 -0.2
72,451 - AZOBR_RS26420 0.51 +0.9
72,451 - AZOBR_RS26420 0.51 -3.4
73,444 + +0.2
73,444 + +2.1
73,444 + -0.2
73,445 - +0.8

Or see this region's nucleotide sequence