Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS25415 and AZOBR_RS25420 are separated by 10 nucleotides AZOBR_RS25420 and AZOBR_RS25425 are separated by 14 nucleotides AZOBR_RS25425 and AZOBR_RS25430 are separated by 32 nucleotides
AZOBR_RS25415: AZOBR_RS25415 - C4-dicarboxylate ABC transporter, at 756,087 to 757,376
_RS25415
AZOBR_RS25420: AZOBR_RS25420 - oxidoreductase, at 757,387 to 758,190
_RS25420
AZOBR_RS25425: AZOBR_RS25425 - dioxygenase, at 758,205 to 758,987
_RS25425
AZOBR_RS25430: AZOBR_RS25430 - Citrate lyase, at 759,020 to 759,871
_RS25430
Position (kb) 757
758
759 Strain fitness (log2 ratio) -2
-1
0
1
2 at 756.558 kb on + strand, within AZOBR_RS25415 at 756.558 kb on + strand, within AZOBR_RS25415 at 756.559 kb on - strand, within AZOBR_RS25415 at 756.559 kb on - strand, within AZOBR_RS25415 at 756.859 kb on - strand, within AZOBR_RS25415 at 757.493 kb on - strand at 757.493 kb on - strand, within AZOBR_RS25420 at 757.865 kb on - strand, within AZOBR_RS25420 at 757.871 kb on - strand, within AZOBR_RS25420 at 757.871 kb on - strand, within AZOBR_RS25420 at 758.018 kb on - strand, within AZOBR_RS25420 at 758.134 kb on + strand at 758.135 kb on - strand at 758.135 kb on - strand at 758.341 kb on + strand, within AZOBR_RS25425 at 758.341 kb on + strand, within AZOBR_RS25425 at 758.341 kb on + strand, within AZOBR_RS25425 at 758.342 kb on - strand, within AZOBR_RS25425 at 758.342 kb on - strand, within AZOBR_RS25425 at 758.342 kb on - strand, within AZOBR_RS25425 at 758.809 kb on + strand, within AZOBR_RS25425 at 758.810 kb on - strand, within AZOBR_RS25425 at 758.810 kb on - strand, within AZOBR_RS25425
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 756,558 + AZOBR_RS25415 0.37 -2.3 756,558 + AZOBR_RS25415 0.37 +0.4 756,559 - AZOBR_RS25415 0.37 -0.4 756,559 - AZOBR_RS25415 0.37 -1.5 756,859 - AZOBR_RS25415 0.60 -0.0 757,493 - +1.8 757,493 - AZOBR_RS25420 0.13 +0.5 757,865 - AZOBR_RS25420 0.59 +0.6 757,871 - AZOBR_RS25420 0.60 +0.0 757,871 - AZOBR_RS25420 0.60 +0.2 758,018 - AZOBR_RS25420 0.78 +1.3 758,134 + -1.1 758,135 - +0.4 758,135 - +1.1 758,341 + AZOBR_RS25425 0.17 -0.5 758,341 + AZOBR_RS25425 0.17 +2.1 758,341 + AZOBR_RS25425 0.17 -0.7 758,342 - AZOBR_RS25425 0.17 +0.4 758,342 - AZOBR_RS25425 0.17 +0.2 758,342 - AZOBR_RS25425 0.17 +0.1 758,809 + AZOBR_RS25425 0.77 +1.5 758,810 - AZOBR_RS25425 0.77 -0.6 758,810 - AZOBR_RS25425 0.77 +1.1
Or see this region's nucleotide sequence