Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS25005 and AZOBR_RS25010 are separated by 127 nucleotides AZOBR_RS25010 and AZOBR_RS25015 are separated by 125 nucleotides AZOBR_RS25015 and AZOBR_RS25020 are separated by 22 nucleotides
AZOBR_RS25005: AZOBR_RS25005 - hypothetical protein, at 665,179 to 666,372
_RS25005
AZOBR_RS25010: AZOBR_RS25010 - hypothetical protein, at 666,500 to 666,847
_RS25010
AZOBR_RS25015: AZOBR_RS25015 - hypothetical protein, at 666,973 to 667,218
_RS25015
AZOBR_RS25020: AZOBR_RS25020 - hypothetical protein, at 667,241 to 670,030
_RS25020
Position (kb) 666
667
668 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 665.984 kb on - strand, within AZOBR_RS25005 at 666.112 kb on + strand, within AZOBR_RS25005 at 666.133 kb on + strand, within AZOBR_RS25005 at 666.134 kb on - strand, within AZOBR_RS25005 at 666.175 kb on + strand, within AZOBR_RS25005 at 666.175 kb on + strand, within AZOBR_RS25005 at 666.176 kb on - strand, within AZOBR_RS25005 at 666.176 kb on - strand, within AZOBR_RS25005 at 666.232 kb on + strand, within AZOBR_RS25005 at 666.232 kb on + strand, within AZOBR_RS25005 at 666.232 kb on + strand, within AZOBR_RS25005 at 666.233 kb on - strand, within AZOBR_RS25005 at 666.233 kb on - strand, within AZOBR_RS25005 at 666.426 kb on - strand at 666.426 kb on - strand at 666.483 kb on - strand at 666.483 kb on - strand at 666.619 kb on + strand, within AZOBR_RS25010 at 666.722 kb on + strand, within AZOBR_RS25010 at 666.723 kb on - strand, within AZOBR_RS25010 at 666.845 kb on + strand at 666.852 kb on + strand at 666.883 kb on - strand at 666.931 kb on + strand at 667.000 kb on + strand, within AZOBR_RS25015 at 667.066 kb on + strand, within AZOBR_RS25015 at 667.066 kb on + strand, within AZOBR_RS25015 at 667.093 kb on + strand, within AZOBR_RS25015 at 667.130 kb on + strand, within AZOBR_RS25015 at 667.130 kb on + strand, within AZOBR_RS25015 at 667.131 kb on - strand, within AZOBR_RS25015 at 667.131 kb on - strand, within AZOBR_RS25015 at 667.147 kb on + strand, within AZOBR_RS25015 at 667.148 kb on - strand, within AZOBR_RS25015 at 667.185 kb on - strand, within AZOBR_RS25015 at 667.225 kb on + strand at 667.231 kb on + strand at 667.345 kb on + strand at 667.345 kb on + strand at 667.345 kb on + strand at 667.345 kb on + strand at 667.345 kb on + strand at 667.345 kb on + strand at 667.345 kb on + strand at 667.345 kb on + strand at 667.346 kb on - strand at 667.346 kb on - strand at 667.346 kb on - strand at 667.346 kb on - strand at 667.346 kb on - strand at 667.826 kb on + strand, within AZOBR_RS25020 at 667.826 kb on + strand, within AZOBR_RS25020 at 667.826 kb on + strand, within AZOBR_RS25020 at 667.827 kb on - strand, within AZOBR_RS25020 at 667.827 kb on - strand, within AZOBR_RS25020 at 667.934 kb on + strand, within AZOBR_RS25020 at 667.935 kb on - strand, within AZOBR_RS25020 at 667.935 kb on - strand, within AZOBR_RS25020 at 667.935 kb on - strand, within AZOBR_RS25020
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 665,984 - AZOBR_RS25005 0.67 +0.6 666,112 + AZOBR_RS25005 0.78 +0.0 666,133 + AZOBR_RS25005 0.80 +0.7 666,134 - AZOBR_RS25005 0.80 +0.9 666,175 + AZOBR_RS25005 0.83 +0.5 666,175 + AZOBR_RS25005 0.83 +0.1 666,176 - AZOBR_RS25005 0.84 +0.8 666,176 - AZOBR_RS25005 0.84 +0.2 666,232 + AZOBR_RS25005 0.88 +0.1 666,232 + AZOBR_RS25005 0.88 -0.3 666,232 + AZOBR_RS25005 0.88 +0.2 666,233 - AZOBR_RS25005 0.88 +2.1 666,233 - AZOBR_RS25005 0.88 -1.5 666,426 - +1.1 666,426 - -1.4 666,483 - -0.9 666,483 - +0.5 666,619 + AZOBR_RS25010 0.34 -0.0 666,722 + AZOBR_RS25010 0.64 +0.0 666,723 - AZOBR_RS25010 0.64 -0.4 666,845 + +0.0 666,852 + -2.0 666,883 - -1.4 666,931 + -0.1 667,000 + AZOBR_RS25015 0.11 -0.3 667,066 + AZOBR_RS25015 0.38 -0.5 667,066 + AZOBR_RS25015 0.38 -0.1 667,093 + AZOBR_RS25015 0.49 +1.1 667,130 + AZOBR_RS25015 0.64 -0.3 667,130 + AZOBR_RS25015 0.64 -3.7 667,131 - AZOBR_RS25015 0.64 +0.1 667,131 - AZOBR_RS25015 0.64 +0.4 667,147 + AZOBR_RS25015 0.71 +0.6 667,148 - AZOBR_RS25015 0.71 -0.9 667,185 - AZOBR_RS25015 0.86 -0.7 667,225 + -2.5 667,231 + -0.5 667,345 + -0.3 667,345 + +0.6 667,345 + +4.1 667,345 + +0.5 667,345 + +0.8 667,345 + -2.8 667,345 + -1.1 667,345 + +1.3 667,346 - -0.5 667,346 - +0.4 667,346 - -3.2 667,346 - -0.0 667,346 - -1.1 667,826 + AZOBR_RS25020 0.21 +0.1 667,826 + AZOBR_RS25020 0.21 -1.4 667,826 + AZOBR_RS25020 0.21 +0.8 667,827 - AZOBR_RS25020 0.21 -0.0 667,827 - AZOBR_RS25020 0.21 -0.2 667,934 + AZOBR_RS25020 0.25 +0.0 667,935 - AZOBR_RS25020 0.25 -1.4 667,935 - AZOBR_RS25020 0.25 -0.3 667,935 - AZOBR_RS25020 0.25 +0.7
Or see this region's nucleotide sequence