Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS23590

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS23580 and AZOBR_RS23585 are separated by 91 nucleotidesAZOBR_RS23585 and AZOBR_RS23590 overlap by 11 nucleotidesAZOBR_RS23590 and AZOBR_RS23595 are separated by 169 nucleotides AZOBR_RS23580: AZOBR_RS23580 - membrane protein, at 321,741 to 322,877 _RS23580 AZOBR_RS23585: AZOBR_RS23585 - hypothetical protein, at 322,969 to 323,829 _RS23585 AZOBR_RS23590: AZOBR_RS23590 - chromosome partitioning protein, at 323,819 to 324,853 _RS23590 AZOBR_RS23595: AZOBR_RS23595 - peptidase M48 Ste24p, at 325,023 to 325,787 _RS23595 Position (kb) 323 324 325Strain fitness (log2 ratio) -3 -2 -1 0 1at 323.418 kb on - strand, within AZOBR_RS23585at 323.510 kb on + strand, within AZOBR_RS23585at 323.510 kb on + strand, within AZOBR_RS23585at 323.511 kb on - strand, within AZOBR_RS23585at 323.511 kb on - strand, within AZOBR_RS23585at 323.511 kb on - strand, within AZOBR_RS23585at 323.511 kb on - strand, within AZOBR_RS23585at 323.511 kb on - strand, within AZOBR_RS23585at 323.511 kb on - strand, within AZOBR_RS23585at 323.821 kb on - strandat 323.855 kb on - strandat 323.958 kb on + strand, within AZOBR_RS23590at 323.959 kb on - strand, within AZOBR_RS23590at 324.261 kb on + strand, within AZOBR_RS23590at 324.261 kb on + strand, within AZOBR_RS23590at 324.261 kb on + strand, within AZOBR_RS23590at 324.393 kb on - strand, within AZOBR_RS23590at 324.400 kb on - strand, within AZOBR_RS23590at 324.462 kb on + strand, within AZOBR_RS23590at 324.462 kb on + strand, within AZOBR_RS23590at 324.463 kb on - strand, within AZOBR_RS23590at 324.463 kb on - strand, within AZOBR_RS23590at 324.465 kb on + strand, within AZOBR_RS23590at 324.465 kb on + strand, within AZOBR_RS23590at 324.466 kb on - strand, within AZOBR_RS23590at 324.466 kb on - strand, within AZOBR_RS23590at 324.466 kb on - strand, within AZOBR_RS23590at 324.760 kb on - strandat 325.036 kb on + strandat 325.036 kb on + strandat 325.036 kb on + strandat 325.258 kb on + strand, within AZOBR_RS23595at 325.258 kb on + strand, within AZOBR_RS23595at 325.258 kb on + strand, within AZOBR_RS23595at 325.259 kb on - strand, within AZOBR_RS23595at 325.454 kb on - strand, within AZOBR_RS23595at 325.454 kb on - strand, within AZOBR_RS23595at 325.471 kb on + strand, within AZOBR_RS23595at 325.471 kb on + strand, within AZOBR_RS23595at 325.472 kb on - strand, within AZOBR_RS23595at 325.606 kb on + strand, within AZOBR_RS23595

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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323,418 - AZOBR_RS23585 0.52 -1.6
323,510 + AZOBR_RS23585 0.63 +0.5
323,510 + AZOBR_RS23585 0.63 -0.1
323,511 - AZOBR_RS23585 0.63 -0.4
323,511 - AZOBR_RS23585 0.63 -0.5
323,511 - AZOBR_RS23585 0.63 -0.4
323,511 - AZOBR_RS23585 0.63 +1.0
323,511 - AZOBR_RS23585 0.63 +0.4
323,511 - AZOBR_RS23585 0.63 +0.5
323,821 - +0.4
323,855 - -2.1
323,958 + AZOBR_RS23590 0.13 -0.3
323,959 - AZOBR_RS23590 0.14 -1.7
324,261 + AZOBR_RS23590 0.43 -1.5
324,261 + AZOBR_RS23590 0.43 +0.3
324,261 + AZOBR_RS23590 0.43 -2.5
324,393 - AZOBR_RS23590 0.55 +0.6
324,400 - AZOBR_RS23590 0.56 -2.3
324,462 + AZOBR_RS23590 0.62 -1.3
324,462 + AZOBR_RS23590 0.62 -2.0
324,463 - AZOBR_RS23590 0.62 -0.8
324,463 - AZOBR_RS23590 0.62 -2.8
324,465 + AZOBR_RS23590 0.62 -0.8
324,465 + AZOBR_RS23590 0.62 -0.1
324,466 - AZOBR_RS23590 0.63 -2.0
324,466 - AZOBR_RS23590 0.63 +0.3
324,466 - AZOBR_RS23590 0.63 -1.5
324,760 - -1.4
325,036 + -0.8
325,036 + -0.1
325,036 + -0.3
325,258 + AZOBR_RS23595 0.31 -3.6
325,258 + AZOBR_RS23595 0.31 -1.0
325,258 + AZOBR_RS23595 0.31 -1.0
325,259 - AZOBR_RS23595 0.31 +0.3
325,454 - AZOBR_RS23595 0.56 -0.4
325,454 - AZOBR_RS23595 0.56 -0.3
325,471 + AZOBR_RS23595 0.59 -0.1
325,471 + AZOBR_RS23595 0.59 +1.7
325,472 - AZOBR_RS23595 0.59 -1.0
325,606 + AZOBR_RS23595 0.76 -1.2

Or see this region's nucleotide sequence