Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS23510

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS23505 and AZOBR_RS23510 are separated by 35 nucleotidesAZOBR_RS23510 and AZOBR_RS23515 are separated by 421 nucleotides AZOBR_RS23505: AZOBR_RS23505 - N-formimino-L-glutamate deiminase, at 302,491 to 303,879 _RS23505 AZOBR_RS23510: AZOBR_RS23510 - N-formylglutamate amidohydrolase, at 303,915 to 304,715 _RS23510 AZOBR_RS23515: AZOBR_RS23515 - ABC transporter permease, at 305,137 to 305,799 _RS23515 Position (kb) 303 304 305Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 303.405 kb on - strand, within AZOBR_RS23505at 303.405 kb on - strand, within AZOBR_RS23505at 303.405 kb on - strand, within AZOBR_RS23505at 303.489 kb on - strand, within AZOBR_RS23505at 303.489 kb on - strand, within AZOBR_RS23505at 303.518 kb on + strand, within AZOBR_RS23505at 303.519 kb on - strand, within AZOBR_RS23505at 303.542 kb on + strand, within AZOBR_RS23505at 303.542 kb on + strand, within AZOBR_RS23505at 303.543 kb on - strand, within AZOBR_RS23505at 303.567 kb on - strand, within AZOBR_RS23505at 303.567 kb on - strand, within AZOBR_RS23505at 303.623 kb on + strand, within AZOBR_RS23505at 303.624 kb on - strand, within AZOBR_RS23505at 303.624 kb on - strand, within AZOBR_RS23505at 303.672 kb on - strand, within AZOBR_RS23505at 304.027 kb on + strand, within AZOBR_RS23510at 304.027 kb on + strand, within AZOBR_RS23510at 304.027 kb on + strand, within AZOBR_RS23510at 304.027 kb on + strand, within AZOBR_RS23510at 304.027 kb on + strand, within AZOBR_RS23510at 304.027 kb on + strand, within AZOBR_RS23510at 304.028 kb on - strand, within AZOBR_RS23510at 304.028 kb on - strand, within AZOBR_RS23510at 304.028 kb on - strand, within AZOBR_RS23510at 304.028 kb on - strand, within AZOBR_RS23510at 304.028 kb on - strand, within AZOBR_RS23510at 304.414 kb on + strand, within AZOBR_RS23510at 304.414 kb on + strand, within AZOBR_RS23510at 304.472 kb on - strand, within AZOBR_RS23510at 304.513 kb on + strand, within AZOBR_RS23510at 304.513 kb on + strand, within AZOBR_RS23510at 304.514 kb on - strand, within AZOBR_RS23510at 304.567 kb on + strand, within AZOBR_RS23510at 304.567 kb on + strand, within AZOBR_RS23510at 304.568 kb on - strand, within AZOBR_RS23510at 304.802 kb on + strandat 304.803 kb on - strandat 304.803 kb on - strandat 304.851 kb on + strandat 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.336 kb on - strand, within AZOBR_RS23515at 305.336 kb on - strand, within AZOBR_RS23515at 305.336 kb on - strand, within AZOBR_RS23515at 305.336 kb on - strand, within AZOBR_RS23515at 305.336 kb on - strand, within AZOBR_RS23515at 305.336 kb on - strand, within AZOBR_RS23515at 305.336 kb on - strand, within AZOBR_RS23515at 305.336 kb on - strand, within AZOBR_RS23515at 305.336 kb on - strand, within AZOBR_RS23515at 305.380 kb on + strand, within AZOBR_RS23515at 305.380 kb on + strand, within AZOBR_RS23515at 305.380 kb on + strand, within AZOBR_RS23515at 305.380 kb on + strand, within AZOBR_RS23515at 305.381 kb on - strand, within AZOBR_RS23515at 305.381 kb on - strand, within AZOBR_RS23515at 305.381 kb on - strand, within AZOBR_RS23515at 305.381 kb on - strand, within AZOBR_RS23515at 305.381 kb on - strand, within AZOBR_RS23515at 305.383 kb on + strand, within AZOBR_RS23515at 305.384 kb on - strand, within AZOBR_RS23515at 305.618 kb on - strand, within AZOBR_RS23515at 305.618 kb on - strand, within AZOBR_RS23515

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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303,405 - AZOBR_RS23505 0.66 -0.3
303,405 - AZOBR_RS23505 0.66 -0.4
303,405 - AZOBR_RS23505 0.66 -0.7
303,489 - AZOBR_RS23505 0.72 +0.2
303,489 - AZOBR_RS23505 0.72 -0.0
303,518 + AZOBR_RS23505 0.74 +0.6
303,519 - AZOBR_RS23505 0.74 -0.8
303,542 + AZOBR_RS23505 0.76 +0.1
303,542 + AZOBR_RS23505 0.76 -0.3
303,543 - AZOBR_RS23505 0.76 +2.2
303,567 - AZOBR_RS23505 0.77 -0.3
303,567 - AZOBR_RS23505 0.77 -1.4
303,623 + AZOBR_RS23505 0.81 -2.3
303,624 - AZOBR_RS23505 0.82 +0.5
303,624 - AZOBR_RS23505 0.82 -0.5
303,672 - AZOBR_RS23505 0.85 -0.1
304,027 + AZOBR_RS23510 0.14 -0.9
304,027 + AZOBR_RS23510 0.14 -0.1
304,027 + AZOBR_RS23510 0.14 +2.1
304,027 + AZOBR_RS23510 0.14 +1.0
304,027 + AZOBR_RS23510 0.14 +1.8
304,027 + AZOBR_RS23510 0.14 -1.3
304,028 - AZOBR_RS23510 0.14 +1.2
304,028 - AZOBR_RS23510 0.14 -0.4
304,028 - AZOBR_RS23510 0.14 -0.0
304,028 - AZOBR_RS23510 0.14 +0.3
304,028 - AZOBR_RS23510 0.14 +0.0
304,414 + AZOBR_RS23510 0.62 -0.5
304,414 + AZOBR_RS23510 0.62 +0.1
304,472 - AZOBR_RS23510 0.70 +0.3
304,513 + AZOBR_RS23510 0.75 +0.1
304,513 + AZOBR_RS23510 0.75 +2.1
304,514 - AZOBR_RS23510 0.75 +0.6
304,567 + AZOBR_RS23510 0.81 +1.2
304,567 + AZOBR_RS23510 0.81 -0.5
304,568 - AZOBR_RS23510 0.82 +1.1
304,802 + -0.2
304,803 - +0.1
304,803 - -0.4
304,851 + +0.5
305,335 + AZOBR_RS23515 0.30 -0.2
305,335 + AZOBR_RS23515 0.30 +0.1
305,335 + AZOBR_RS23515 0.30 -0.0
305,335 + AZOBR_RS23515 0.30 +1.2
305,335 + AZOBR_RS23515 0.30 +1.0
305,335 + AZOBR_RS23515 0.30 -0.8
305,335 + AZOBR_RS23515 0.30 +0.8
305,335 + AZOBR_RS23515 0.30 -0.1
305,335 + AZOBR_RS23515 0.30 +0.6
305,335 + AZOBR_RS23515 0.30 -2.2
305,335 + AZOBR_RS23515 0.30 -0.4
305,336 - AZOBR_RS23515 0.30 +0.7
305,336 - AZOBR_RS23515 0.30 -1.7
305,336 - AZOBR_RS23515 0.30 +0.9
305,336 - AZOBR_RS23515 0.30 -0.0
305,336 - AZOBR_RS23515 0.30 -0.2
305,336 - AZOBR_RS23515 0.30 +0.2
305,336 - AZOBR_RS23515 0.30 -0.3
305,336 - AZOBR_RS23515 0.30 -1.3
305,336 - AZOBR_RS23515 0.30 -0.4
305,380 + AZOBR_RS23515 0.37 -2.0
305,380 + AZOBR_RS23515 0.37 +0.9
305,380 + AZOBR_RS23515 0.37 -3.9
305,380 + AZOBR_RS23515 0.37 +2.9
305,381 - AZOBR_RS23515 0.37 -0.2
305,381 - AZOBR_RS23515 0.37 -1.0
305,381 - AZOBR_RS23515 0.37 +0.7
305,381 - AZOBR_RS23515 0.37 -0.8
305,381 - AZOBR_RS23515 0.37 -1.8
305,383 + AZOBR_RS23515 0.37 -0.9
305,384 - AZOBR_RS23515 0.37 +0.6
305,618 - AZOBR_RS23515 0.73 +1.0
305,618 - AZOBR_RS23515 0.73 -1.6

Or see this region's nucleotide sequence