Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS22875

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS22870 and AZOBR_RS22875 are separated by 57 nucleotidesAZOBR_RS22875 and AZOBR_RS22880 are separated by 260 nucleotides AZOBR_RS22870: AZOBR_RS22870 - hypothetical protein, at 140,532 to 141,854 _RS22870 AZOBR_RS22875: AZOBR_RS22875 - glucoamylase, at 141,912 to 143,708 _RS22875 AZOBR_RS22880: AZOBR_RS22880 - hypothetical protein, at 143,969 to 145,072 _RS22880 Position (kb) 141 142 143 144Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 141.018 kb on + strand, within AZOBR_RS22870at 141.019 kb on - strand, within AZOBR_RS22870at 141.097 kb on - strand, within AZOBR_RS22870at 141.111 kb on + strand, within AZOBR_RS22870at 141.127 kb on - strand, within AZOBR_RS22870at 141.142 kb on - strand, within AZOBR_RS22870at 141.142 kb on - strand, within AZOBR_RS22870at 141.142 kb on - strand, within AZOBR_RS22870at 141.178 kb on - strand, within AZOBR_RS22870at 141.223 kb on - strand, within AZOBR_RS22870at 141.454 kb on - strand, within AZOBR_RS22870at 142.040 kb on - strandat 142.040 kb on - strandat 142.129 kb on + strand, within AZOBR_RS22875at 142.129 kb on + strand, within AZOBR_RS22875at 142.129 kb on + strand, within AZOBR_RS22875at 142.129 kb on + strand, within AZOBR_RS22875at 142.129 kb on + strand, within AZOBR_RS22875at 142.130 kb on - strand, within AZOBR_RS22875at 142.130 kb on - strand, within AZOBR_RS22875at 142.130 kb on - strand, within AZOBR_RS22875at 142.345 kb on + strand, within AZOBR_RS22875at 142.378 kb on + strand, within AZOBR_RS22875at 142.675 kb on + strand, within AZOBR_RS22875at 142.675 kb on + strand, within AZOBR_RS22875at 142.676 kb on - strand, within AZOBR_RS22875at 142.676 kb on - strand, within AZOBR_RS22875at 142.795 kb on + strand, within AZOBR_RS22875at 142.796 kb on - strand, within AZOBR_RS22875at 142.796 kb on - strand, within AZOBR_RS22875at 142.796 kb on - strand, within AZOBR_RS22875at 142.796 kb on - strand, within AZOBR_RS22875at 142.796 kb on - strand, within AZOBR_RS22875at 142.796 kb on - strand, within AZOBR_RS22875at 142.933 kb on + strand, within AZOBR_RS22875at 142.934 kb on - strand, within AZOBR_RS22875at 143.071 kb on + strand, within AZOBR_RS22875at 143.170 kb on + strand, within AZOBR_RS22875at 143.170 kb on + strand, within AZOBR_RS22875at 143.170 kb on + strand, within AZOBR_RS22875at 143.170 kb on + strand, within AZOBR_RS22875at 143.170 kb on + strand, within AZOBR_RS22875at 143.170 kb on + strand, within AZOBR_RS22875at 143.171 kb on - strand, within AZOBR_RS22875at 143.171 kb on - strand, within AZOBR_RS22875at 143.406 kb on + strand, within AZOBR_RS22875at 143.406 kb on + strand, within AZOBR_RS22875at 143.407 kb on - strand, within AZOBR_RS22875at 143.686 kb on + strandat 143.686 kb on + strandat 143.841 kb on + strandat 143.841 kb on + strandat 143.842 kb on - strandat 144.360 kb on - strand, within AZOBR_RS22880at 144.485 kb on + strand, within AZOBR_RS22880

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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141,018 + AZOBR_RS22870 0.37 -1.3
141,019 - AZOBR_RS22870 0.37 +0.5
141,097 - AZOBR_RS22870 0.43 +2.1
141,111 + AZOBR_RS22870 0.44 -0.2
141,127 - AZOBR_RS22870 0.45 +1.1
141,142 - AZOBR_RS22870 0.46 +1.1
141,142 - AZOBR_RS22870 0.46 +0.1
141,142 - AZOBR_RS22870 0.46 +2.1
141,178 - AZOBR_RS22870 0.49 +1.7
141,223 - AZOBR_RS22870 0.52 -1.3
141,454 - AZOBR_RS22870 0.70 +0.5
142,040 - +0.1
142,040 - +0.7
142,129 + AZOBR_RS22875 0.12 -1.6
142,129 + AZOBR_RS22875 0.12 -0.3
142,129 + AZOBR_RS22875 0.12 +0.1
142,129 + AZOBR_RS22875 0.12 +1.2
142,129 + AZOBR_RS22875 0.12 +0.4
142,130 - AZOBR_RS22875 0.12 -0.7
142,130 - AZOBR_RS22875 0.12 -0.1
142,130 - AZOBR_RS22875 0.12 -0.8
142,345 + AZOBR_RS22875 0.24 +0.1
142,378 + AZOBR_RS22875 0.26 +1.1
142,675 + AZOBR_RS22875 0.42 -0.3
142,675 + AZOBR_RS22875 0.42 +0.0
142,676 - AZOBR_RS22875 0.43 -1.0
142,676 - AZOBR_RS22875 0.43 +0.1
142,795 + AZOBR_RS22875 0.49 -1.1
142,796 - AZOBR_RS22875 0.49 -1.7
142,796 - AZOBR_RS22875 0.49 +0.2
142,796 - AZOBR_RS22875 0.49 -1.5
142,796 - AZOBR_RS22875 0.49 -3.3
142,796 - AZOBR_RS22875 0.49 +0.4
142,796 - AZOBR_RS22875 0.49 -0.5
142,933 + AZOBR_RS22875 0.57 +0.1
142,934 - AZOBR_RS22875 0.57 +0.4
143,071 + AZOBR_RS22875 0.64 +0.1
143,170 + AZOBR_RS22875 0.70 -0.4
143,170 + AZOBR_RS22875 0.70 -0.8
143,170 + AZOBR_RS22875 0.70 -2.8
143,170 + AZOBR_RS22875 0.70 +1.0
143,170 + AZOBR_RS22875 0.70 -2.1
143,170 + AZOBR_RS22875 0.70 -0.6
143,171 - AZOBR_RS22875 0.70 -1.6
143,171 - AZOBR_RS22875 0.70 -0.8
143,406 + AZOBR_RS22875 0.83 -1.1
143,406 + AZOBR_RS22875 0.83 +0.7
143,407 - AZOBR_RS22875 0.83 -1.0
143,686 + +0.4
143,686 + -0.2
143,841 + -0.0
143,841 + +2.1
143,842 - +2.8
144,360 - AZOBR_RS22880 0.35 -0.3
144,485 + AZOBR_RS22880 0.47 +0.9

Or see this region's nucleotide sequence