Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS20060

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS20060 and AZOBR_RS20065 are separated by 120 nucleotidesAZOBR_RS20065 and AZOBR_RS20070 overlap by 52 nucleotidesAZOBR_RS20070 and AZOBR_RS20075 are separated by 231 nucleotides AZOBR_RS20060: AZOBR_RS20060 - acyl-homoserine-lactone acylase, at 1,265,146 to 1,267,566 _RS20060 AZOBR_RS20065: AZOBR_RS20065 - hypothetical protein, at 1,267,687 to 1,268,118 _RS20065 AZOBR_RS20070: AZOBR_RS20070 - hypothetical protein, at 1,268,067 to 1,268,249 _RS20070 AZOBR_RS20075: AZOBR_RS20075 - hypothetical protein, at 1,268,481 to 1,269,125 _RS20075 Position (kb) 1265 1266 1267 1268Strain fitness (log2 ratio) -3 -2 -1 0 1at 1264.725 kb on + strandat 1265.348 kb on + strandat 1265.349 kb on - strandat 1265.349 kb on - strandat 1265.709 kb on - strand, within AZOBR_RS20060at 1266.128 kb on + strand, within AZOBR_RS20060at 1266.129 kb on - strand, within AZOBR_RS20060at 1266.129 kb on - strand, within AZOBR_RS20060at 1266.129 kb on - strand, within AZOBR_RS20060at 1267.166 kb on + strand, within AZOBR_RS20060at 1267.166 kb on + strand, within AZOBR_RS20060at 1267.166 kb on + strand, within AZOBR_RS20060at 1267.167 kb on - strand, within AZOBR_RS20060at 1267.167 kb on - strand, within AZOBR_RS20060at 1267.167 kb on - strand, within AZOBR_RS20060at 1267.685 kb on + strandat 1267.685 kb on + strandat 1267.686 kb on - strandat 1267.859 kb on + strand, within AZOBR_RS20065at 1267.860 kb on - strand, within AZOBR_RS20065at 1267.860 kb on - strand, within AZOBR_RS20065at 1267.860 kb on - strand, within AZOBR_RS20065at 1267.865 kb on + strand, within AZOBR_RS20065at 1268.337 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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1,264,725 + -0.2
1,265,348 + -1.5
1,265,349 - +1.3
1,265,349 - -0.3
1,265,709 - AZOBR_RS20060 0.23 -3.2
1,266,128 + AZOBR_RS20060 0.41 +0.1
1,266,129 - AZOBR_RS20060 0.41 +0.2
1,266,129 - AZOBR_RS20060 0.41 -0.8
1,266,129 - AZOBR_RS20060 0.41 -0.9
1,267,166 + AZOBR_RS20060 0.83 +0.0
1,267,166 + AZOBR_RS20060 0.83 +0.7
1,267,166 + AZOBR_RS20060 0.83 +0.8
1,267,167 - AZOBR_RS20060 0.83 -3.6
1,267,167 - AZOBR_RS20060 0.83 -0.3
1,267,167 - AZOBR_RS20060 0.83 +0.9
1,267,685 + +0.5
1,267,685 + -0.2
1,267,686 - -1.7
1,267,859 + AZOBR_RS20065 0.40 +0.6
1,267,860 - AZOBR_RS20065 0.40 -0.5
1,267,860 - AZOBR_RS20065 0.40 -1.3
1,267,860 - AZOBR_RS20065 0.40 +1.2
1,267,865 + AZOBR_RS20065 0.41 +0.5
1,268,337 - -0.2

Or see this region's nucleotide sequence