Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS19975

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS19970 and AZOBR_RS19975 are separated by 243 nucleotidesAZOBR_RS19975 and AZOBR_RS19980 are separated by 35 nucleotides AZOBR_RS19970: AZOBR_RS19970 - multidrug transporter, at 1,242,768 to 1,243,874 _RS19970 AZOBR_RS19975: AZOBR_RS19975 - MFS transporter, at 1,244,118 to 1,244,459 _RS19975 AZOBR_RS19980: AZOBR_RS19980 - MFS transporter, at 1,244,495 to 1,245,628 _RS19980 Position (kb) 1244 1245Strain fitness (log2 ratio) -3 -2 -1 0 1at 1243.462 kb on - strand, within AZOBR_RS19970at 1243.512 kb on + strand, within AZOBR_RS19970at 1243.513 kb on - strand, within AZOBR_RS19970at 1243.513 kb on - strand, within AZOBR_RS19970at 1243.513 kb on - strand, within AZOBR_RS19970at 1243.513 kb on - strand, within AZOBR_RS19970at 1243.513 kb on - strand, within AZOBR_RS19970at 1243.513 kb on - strand, within AZOBR_RS19970at 1243.513 kb on - strand, within AZOBR_RS19970at 1243.872 kb on + strandat 1243.873 kb on - strandat 1244.250 kb on + strand, within AZOBR_RS19975at 1244.251 kb on - strand, within AZOBR_RS19975at 1244.780 kb on + strand, within AZOBR_RS19980at 1244.780 kb on + strand, within AZOBR_RS19980at 1244.780 kb on + strand, within AZOBR_RS19980at 1244.781 kb on - strand, within AZOBR_RS19980at 1244.781 kb on - strand, within AZOBR_RS19980at 1244.847 kb on - strand, within AZOBR_RS19980at 1244.909 kb on + strand, within AZOBR_RS19980at 1244.909 kb on + strand, within AZOBR_RS19980at 1244.936 kb on + strand, within AZOBR_RS19980at 1245.244 kb on + strand, within AZOBR_RS19980at 1245.285 kb on - strand, within AZOBR_RS19980

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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1,243,462 - AZOBR_RS19970 0.63 -2.1
1,243,512 + AZOBR_RS19970 0.67 -0.2
1,243,513 - AZOBR_RS19970 0.67 +0.2
1,243,513 - AZOBR_RS19970 0.67 +0.1
1,243,513 - AZOBR_RS19970 0.67 +0.0
1,243,513 - AZOBR_RS19970 0.67 -0.1
1,243,513 - AZOBR_RS19970 0.67 +0.0
1,243,513 - AZOBR_RS19970 0.67 -2.2
1,243,513 - AZOBR_RS19970 0.67 +0.5
1,243,872 + -0.8
1,243,873 - -0.9
1,244,250 + AZOBR_RS19975 0.39 -0.5
1,244,251 - AZOBR_RS19975 0.39 -0.7
1,244,780 + AZOBR_RS19980 0.25 +1.3
1,244,780 + AZOBR_RS19980 0.25 -0.5
1,244,780 + AZOBR_RS19980 0.25 -2.9
1,244,781 - AZOBR_RS19980 0.25 +0.5
1,244,781 - AZOBR_RS19980 0.25 +0.5
1,244,847 - AZOBR_RS19980 0.31 -1.0
1,244,909 + AZOBR_RS19980 0.37 +0.7
1,244,909 + AZOBR_RS19980 0.37 -0.0
1,244,936 + AZOBR_RS19980 0.39 -1.7
1,245,244 + AZOBR_RS19980 0.66 +0.3
1,245,285 - AZOBR_RS19980 0.70 -0.7

Or see this region's nucleotide sequence