Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18870

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS18860 and AZOBR_RS18865 are separated by 112 nucleotidesAZOBR_RS18865 and AZOBR_RS18870 are separated by 16 nucleotidesAZOBR_RS18870 and AZOBR_RS18875 are separated by 123 nucleotidesAZOBR_RS18875 and AZOBR_RS18880 are separated by 34 nucleotides AZOBR_RS18860: AZOBR_RS18860 - hypothetical protein, at 1,002,189 to 1,003,088 _RS18860 AZOBR_RS18865: AZOBR_RS18865 - ABC transporter ATP-binding protein, at 1,003,201 to 1,003,932 _RS18865 AZOBR_RS18870: AZOBR_RS18870 - RNA polymerase sigma54 factor, at 1,003,949 to 1,005,526 _RS18870 AZOBR_RS18875: AZOBR_RS18875 - ribose ABC transporter permease, at 1,005,650 to 1,006,246 _RS18875 AZOBR_RS18880: AZOBR_RS18880 - nitrogen regulatory protein, at 1,006,281 to 1,006,739 _RS18880 Position (kb) 1003 1004 1005 1006Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1003.931 kb on - strandat 1004.313 kb on - strand, within AZOBR_RS18870at 1004.313 kb on - strand, within AZOBR_RS18870at 1004.361 kb on - strand, within AZOBR_RS18870at 1005.029 kb on + strand, within AZOBR_RS18870at 1005.029 kb on + strand, within AZOBR_RS18870at 1005.030 kb on - strand, within AZOBR_RS18870at 1005.030 kb on - strand, within AZOBR_RS18870at 1005.414 kb on + strandat 1005.524 kb on + strandat 1005.576 kb on + strandat 1005.576 kb on + strandat 1005.576 kb on + strandat 1005.577 kb on - strandat 1005.614 kb on + strandat 1005.614 kb on + strandat 1005.615 kb on - strandat 1005.615 kb on - strandat 1005.620 kb on + strandat 1005.740 kb on + strand, within AZOBR_RS18875at 1005.740 kb on + strand, within AZOBR_RS18875at 1006.147 kb on + strandat 1006.148 kb on - strandat 1006.148 kb on - strand, within AZOBR_RS18875

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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1,003,931 - -3.6
1,004,313 - AZOBR_RS18870 0.23 -2.4
1,004,313 - AZOBR_RS18870 0.23 -3.6
1,004,361 - AZOBR_RS18870 0.26 -3.3
1,005,029 + AZOBR_RS18870 0.68 -2.7
1,005,029 + AZOBR_RS18870 0.68 -0.5
1,005,030 - AZOBR_RS18870 0.69 -2.8
1,005,030 - AZOBR_RS18870 0.69 +0.5
1,005,414 + -2.1
1,005,524 + +1.0
1,005,576 + -0.3
1,005,576 + -1.2
1,005,576 + -1.3
1,005,577 - +1.8
1,005,614 + -2.2
1,005,614 + +1.4
1,005,615 - +2.1
1,005,615 - +2.1
1,005,620 + +0.7
1,005,740 + AZOBR_RS18875 0.15 +0.4
1,005,740 + AZOBR_RS18875 0.15 +1.9
1,006,147 + +2.7
1,006,148 - +2.1
1,006,148 - AZOBR_RS18875 0.83 -1.7

Or see this region's nucleotide sequence