Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS18860 and AZOBR_RS18865 are separated by 112 nucleotides AZOBR_RS18865 and AZOBR_RS18870 are separated by 16 nucleotides AZOBR_RS18870 and AZOBR_RS18875 are separated by 123 nucleotides AZOBR_RS18875 and AZOBR_RS18880 are separated by 34 nucleotides
AZOBR_RS18860: AZOBR_RS18860 - hypothetical protein, at 1,002,189 to 1,003,088
_RS18860
AZOBR_RS18865: AZOBR_RS18865 - ABC transporter ATP-binding protein, at 1,003,201 to 1,003,932
_RS18865
AZOBR_RS18870: AZOBR_RS18870 - RNA polymerase sigma54 factor, at 1,003,949 to 1,005,526
_RS18870
AZOBR_RS18875: AZOBR_RS18875 - ribose ABC transporter permease, at 1,005,650 to 1,006,246
_RS18875
AZOBR_RS18880: AZOBR_RS18880 - nitrogen regulatory protein, at 1,006,281 to 1,006,739
_RS18880
Position (kb)
1003
1004
1005
1006 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1003.931 kb on - strand at 1004.313 kb on - strand, within AZOBR_RS18870 at 1004.313 kb on - strand, within AZOBR_RS18870 at 1004.361 kb on - strand, within AZOBR_RS18870 at 1005.029 kb on + strand, within AZOBR_RS18870 at 1005.029 kb on + strand, within AZOBR_RS18870 at 1005.030 kb on - strand, within AZOBR_RS18870 at 1005.030 kb on - strand, within AZOBR_RS18870 at 1005.414 kb on + strand at 1005.524 kb on + strand at 1005.576 kb on + strand at 1005.576 kb on + strand at 1005.576 kb on + strand at 1005.577 kb on - strand at 1005.614 kb on + strand at 1005.614 kb on + strand at 1005.615 kb on - strand at 1005.615 kb on - strand at 1005.620 kb on + strand at 1005.740 kb on + strand, within AZOBR_RS18875 at 1005.740 kb on + strand, within AZOBR_RS18875 at 1006.147 kb on + strand at 1006.148 kb on - strand at 1006.148 kb on - strand, within AZOBR_RS18875
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 1,003,931 - -3.6 1,004,313 - AZOBR_RS18870 0.23 -2.4 1,004,313 - AZOBR_RS18870 0.23 -3.6 1,004,361 - AZOBR_RS18870 0.26 -3.3 1,005,029 + AZOBR_RS18870 0.68 -2.7 1,005,029 + AZOBR_RS18870 0.68 -0.5 1,005,030 - AZOBR_RS18870 0.69 -2.8 1,005,030 - AZOBR_RS18870 0.69 +0.5 1,005,414 + -2.1 1,005,524 + +1.0 1,005,576 + -0.3 1,005,576 + -1.2 1,005,576 + -1.3 1,005,577 - +1.8 1,005,614 + -2.2 1,005,614 + +1.4 1,005,615 - +2.1 1,005,615 - +2.1 1,005,620 + +0.7 1,005,740 + AZOBR_RS18875 0.15 +0.4 1,005,740 + AZOBR_RS18875 0.15 +1.9 1,006,147 + +2.7 1,006,148 - +2.1 1,006,148 - AZOBR_RS18875 0.83 -1.7
Or see this region's nucleotide sequence