Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS18170 and AZOBR_RS18175 are separated by 257 nucleotides AZOBR_RS18175 and AZOBR_RS18180 are separated by 4 nucleotides AZOBR_RS18180 and AZOBR_RS18185 are separated by 60 nucleotides
AZOBR_RS18170: AZOBR_RS18170 - sugar ABC transporter, at 834,770 to 836,005
_RS18170
AZOBR_RS18175: AZOBR_RS18175 - sugar ABC transporter, at 836,263 to 837,150
_RS18175
AZOBR_RS18180: AZOBR_RS18180 - sugar ABC transporter, at 837,155 to 837,976
_RS18180
AZOBR_RS18185: AZOBR_RS18185 - sugar ABC transporter, at 838,037 to 839,191
_RS18185
Position (kb) 836
837
838 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 835.298 kb on + strand, within AZOBR_RS18170 at 835.298 kb on + strand, within AZOBR_RS18170 at 835.298 kb on + strand, within AZOBR_RS18170 at 835.299 kb on - strand, within AZOBR_RS18170 at 835.346 kb on + strand, within AZOBR_RS18170 at 835.448 kb on + strand, within AZOBR_RS18170 at 835.460 kb on + strand, within AZOBR_RS18170 at 835.502 kb on + strand, within AZOBR_RS18170 at 835.503 kb on - strand, within AZOBR_RS18170 at 835.503 kb on - strand, within AZOBR_RS18170 at 835.824 kb on - strand, within AZOBR_RS18170 at 836.003 kb on + strand at 836.047 kb on - strand at 836.047 kb on - strand at 836.110 kb on - strand at 836.110 kb on - strand at 836.110 kb on - strand at 836.110 kb on - strand at 836.110 kb on - strand at 836.110 kb on - strand at 836.110 kb on - strand at 836.110 kb on - strand at 836.315 kb on - strand at 836.404 kb on + strand, within AZOBR_RS18175 at 836.404 kb on + strand, within AZOBR_RS18175 at 836.405 kb on - strand, within AZOBR_RS18175 at 836.405 kb on - strand, within AZOBR_RS18175 at 836.405 kb on - strand, within AZOBR_RS18175 at 836.405 kb on - strand, within AZOBR_RS18175 at 836.405 kb on - strand, within AZOBR_RS18175 at 836.648 kb on - strand, within AZOBR_RS18175 at 836.923 kb on - strand, within AZOBR_RS18175 at 837.031 kb on + strand, within AZOBR_RS18175 at 837.032 kb on - strand, within AZOBR_RS18175 at 837.103 kb on + strand at 837.104 kb on - strand at 837.225 kb on - strand at 837.773 kb on + strand, within AZOBR_RS18180 at 837.773 kb on + strand, within AZOBR_RS18180 at 837.773 kb on + strand, within AZOBR_RS18180 at 837.773 kb on + strand, within AZOBR_RS18180 at 837.774 kb on - strand, within AZOBR_RS18180 at 837.774 kb on - strand, within AZOBR_RS18180 at 837.774 kb on - strand, within AZOBR_RS18180 at 837.893 kb on + strand, within AZOBR_RS18180 at 837.917 kb on + strand at 837.935 kb on + strand at 837.935 kb on + strand at 837.936 kb on - strand at 837.936 kb on - strand at 838.022 kb on - strand at 838.042 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 835,298 + AZOBR_RS18170 0.43 -0.5 835,298 + AZOBR_RS18170 0.43 +0.8 835,298 + AZOBR_RS18170 0.43 +0.1 835,299 - AZOBR_RS18170 0.43 +0.2 835,346 + AZOBR_RS18170 0.47 +2.1 835,448 + AZOBR_RS18170 0.55 -0.4 835,460 + AZOBR_RS18170 0.56 +0.0 835,502 + AZOBR_RS18170 0.59 +0.1 835,503 - AZOBR_RS18170 0.59 -0.4 835,503 - AZOBR_RS18170 0.59 +0.2 835,824 - AZOBR_RS18170 0.85 +1.5 836,003 + -0.8 836,047 - -0.2 836,047 - +1.0 836,110 - -0.7 836,110 - +1.0 836,110 - -0.2 836,110 - -0.4 836,110 - +0.3 836,110 - -0.3 836,110 - -0.3 836,110 - +0.5 836,315 - +0.6 836,404 + AZOBR_RS18175 0.16 -0.5 836,404 + AZOBR_RS18175 0.16 -0.9 836,405 - AZOBR_RS18175 0.16 -0.5 836,405 - AZOBR_RS18175 0.16 -0.8 836,405 - AZOBR_RS18175 0.16 +1.1 836,405 - AZOBR_RS18175 0.16 +0.7 836,405 - AZOBR_RS18175 0.16 +0.2 836,648 - AZOBR_RS18175 0.43 +1.4 836,923 - AZOBR_RS18175 0.74 +0.2 837,031 + AZOBR_RS18175 0.86 -0.2 837,032 - AZOBR_RS18175 0.87 -0.2 837,103 + +0.6 837,104 - -3.4 837,225 - -1.3 837,773 + AZOBR_RS18180 0.75 +0.3 837,773 + AZOBR_RS18180 0.75 -0.9 837,773 + AZOBR_RS18180 0.75 -0.2 837,773 + AZOBR_RS18180 0.75 +0.5 837,774 - AZOBR_RS18180 0.75 +2.1 837,774 - AZOBR_RS18180 0.75 +0.7 837,774 - AZOBR_RS18180 0.75 +2.1 837,893 + AZOBR_RS18180 0.90 -1.1 837,917 + -1.4 837,935 + -0.1 837,935 + +0.2 837,936 - -1.9 837,936 - +1.3 838,022 - +0.2 838,042 + -0.4
Or see this region's nucleotide sequence