Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18155

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS18150 and AZOBR_RS18155 are separated by 61 nucleotidesAZOBR_RS18155 and AZOBR_RS18160 are separated by 70 nucleotides AZOBR_RS18150: AZOBR_RS18150 - membrane protein, at 829,837 to 830,988 _RS18150 AZOBR_RS18155: AZOBR_RS18155 - enoyl-CoA hydratase, at 831,050 to 831,796 _RS18155 AZOBR_RS18160: AZOBR_RS18160 - fumarylacetoacetate hydrolase, at 831,867 to 833,012 _RS18160 Position (kb) 831 832Strain fitness (log2 ratio) -1 0 1at 830.138 kb on - strand, within AZOBR_RS18150at 830.522 kb on - strand, within AZOBR_RS18150at 830.522 kb on - strand, within AZOBR_RS18150at 830.530 kb on + strand, within AZOBR_RS18150at 830.531 kb on - strand, within AZOBR_RS18150at 830.797 kb on + strand, within AZOBR_RS18150at 830.830 kb on + strand, within AZOBR_RS18150at 830.830 kb on + strand, within AZOBR_RS18150at 830.855 kb on - strand, within AZOBR_RS18150at 830.855 kb on - strand, within AZOBR_RS18150at 830.855 kb on - strand, within AZOBR_RS18150at 830.951 kb on - strandat 831.278 kb on + strand, within AZOBR_RS18155at 831.278 kb on + strand, within AZOBR_RS18155at 831.278 kb on + strand, within AZOBR_RS18155at 831.332 kb on + strand, within AZOBR_RS18155at 831.695 kb on + strand, within AZOBR_RS18155at 831.794 kb on + strandat 832.347 kb on + strand, within AZOBR_RS18160at 832.348 kb on - strand, within AZOBR_RS18160

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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830,138 - AZOBR_RS18150 0.26 -0.5
830,522 - AZOBR_RS18150 0.59 +0.7
830,522 - AZOBR_RS18150 0.59 -0.5
830,530 + AZOBR_RS18150 0.60 +1.2
830,531 - AZOBR_RS18150 0.60 -0.6
830,797 + AZOBR_RS18150 0.83 +0.9
830,830 + AZOBR_RS18150 0.86 -0.3
830,830 + AZOBR_RS18150 0.86 +1.1
830,855 - AZOBR_RS18150 0.88 +0.7
830,855 - AZOBR_RS18150 0.88 +0.5
830,855 - AZOBR_RS18150 0.88 -1.1
830,951 - +1.0
831,278 + AZOBR_RS18155 0.31 +1.1
831,278 + AZOBR_RS18155 0.31 -0.2
831,278 + AZOBR_RS18155 0.31 +1.1
831,332 + AZOBR_RS18155 0.38 -0.9
831,695 + AZOBR_RS18155 0.86 +0.7
831,794 + -0.5
832,347 + AZOBR_RS18160 0.42 -0.8
832,348 - AZOBR_RS18160 0.42 +0.0

Or see this region's nucleotide sequence