Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS16750 and AZOBR_RS16755 are separated by 126 nucleotides AZOBR_RS16755 and AZOBR_RS16760 are separated by 29 nucleotides AZOBR_RS16760 and AZOBR_RS14375 are separated by 66 nucleotides AZOBR_RS14375 and AZOBR_RS16765 are separated by 273 nucleotides
AZOBR_RS16750: AZOBR_RS16750 - TetR family transcriptional regulator, at 514,254 to 514,853
_RS16750
AZOBR_RS16755: AZOBR_RS16755 - alkylhydroperoxidase, at 514,980 to 515,429
_RS16755
AZOBR_RS16760: AZOBR_RS16760 - GntR family transcriptional regulator, at 515,459 to 516,904
_RS16760
AZOBR_RS14375: AZOBR_RS14375 - suhB, at 516,971 to 517,048
_RS14375
AZOBR_RS16765: AZOBR_RS16765 - 5'-nucleotidase, at 517,322 to 518,857
_RS16765
Position (kb) 515
516
517 Strain fitness (log2 ratio) -2
-1
0
1
2 at 514.563 kb on + strand, within AZOBR_RS16750 at 515.049 kb on + strand, within AZOBR_RS16755 at 515.050 kb on - strand, within AZOBR_RS16755 at 515.050 kb on - strand, within AZOBR_RS16755 at 515.050 kb on - strand, within AZOBR_RS16755 at 515.050 kb on - strand, within AZOBR_RS16755 at 515.094 kb on + strand, within AZOBR_RS16755 at 515.095 kb on - strand, within AZOBR_RS16755 at 515.127 kb on + strand, within AZOBR_RS16755 at 515.379 kb on + strand, within AZOBR_RS16755 at 515.379 kb on + strand, within AZOBR_RS16755 at 515.580 kb on + strand at 515.581 kb on - strand at 515.766 kb on + strand, within AZOBR_RS16760 at 515.767 kb on - strand, within AZOBR_RS16760 at 515.800 kb on - strand, within AZOBR_RS16760 at 516.039 kb on + strand, within AZOBR_RS16760 at 516.040 kb on - strand, within AZOBR_RS16760 at 516.345 kb on + strand, within AZOBR_RS16760 at 516.708 kb on + strand, within AZOBR_RS16760 at 516.709 kb on - strand, within AZOBR_RS16760 at 516.917 kb on - strand at 517.016 kb on - strand, within AZOBR_RS14375 at 517.052 kb on + strand at 517.114 kb on - strand at 517.132 kb on - strand at 517.135 kb on + strand at 517.381 kb on - strand at 517.381 kb on - strand at 517.443 kb on - strand at 517.443 kb on - strand at 517.592 kb on + strand, within AZOBR_RS16765 at 517.592 kb on + strand, within AZOBR_RS16765 at 517.592 kb on + strand, within AZOBR_RS16765 at 517.592 kb on + strand, within AZOBR_RS16765 at 517.593 kb on - strand, within AZOBR_RS16765 at 517.593 kb on - strand, within AZOBR_RS16765
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 514,563 + AZOBR_RS16750 0.52 -1.0 515,049 + AZOBR_RS16755 0.15 +0.4 515,050 - AZOBR_RS16755 0.16 -0.5 515,050 - AZOBR_RS16755 0.16 +0.6 515,050 - AZOBR_RS16755 0.16 -0.1 515,050 - AZOBR_RS16755 0.16 -0.2 515,094 + AZOBR_RS16755 0.25 -0.7 515,095 - AZOBR_RS16755 0.26 +1.1 515,127 + AZOBR_RS16755 0.33 +0.2 515,379 + AZOBR_RS16755 0.89 +1.9 515,379 + AZOBR_RS16755 0.89 +0.4 515,580 + +0.9 515,581 - +0.0 515,766 + AZOBR_RS16760 0.21 +1.4 515,767 - AZOBR_RS16760 0.21 -0.2 515,800 - AZOBR_RS16760 0.24 +0.4 516,039 + AZOBR_RS16760 0.40 +0.3 516,040 - AZOBR_RS16760 0.40 +0.1 516,345 + AZOBR_RS16760 0.61 +0.3 516,708 + AZOBR_RS16760 0.86 -0.3 516,709 - AZOBR_RS16760 0.86 -1.9 516,917 - -0.2 517,016 - AZOBR_RS14375 0.58 -0.4 517,052 + -0.7 517,114 - -0.2 517,132 - +0.0 517,135 + -0.9 517,381 - +0.8 517,381 - -1.3 517,443 - -0.5 517,443 - +0.7 517,592 + AZOBR_RS16765 0.18 +0.3 517,592 + AZOBR_RS16765 0.18 -0.8 517,592 + AZOBR_RS16765 0.18 +1.9 517,592 + AZOBR_RS16765 0.18 -1.3 517,593 - AZOBR_RS16765 0.18 -0.5 517,593 - AZOBR_RS16765 0.18 +0.2
Or see this region's nucleotide sequence