Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS13135

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS13135 and AZOBR_RS13140 are separated by 72 nucleotidesAZOBR_RS13140 and AZOBR_RS13145 are separated by 28 nucleotides AZOBR_RS13135: AZOBR_RS13135 - hypothetical protein, at 2,772,228 to 2,772,440 _RS13135 AZOBR_RS13140: AZOBR_RS13140 - glyoxylate reductase (NADP+), at 2,772,513 to 2,773,172 _RS13140 AZOBR_RS13145: AZOBR_RS13145 - hypothetical protein, at 2,773,201 to 2,773,986 _RS13145 Position (kb) 2772 2773Strain fitness (log2 ratio) -3 -2 -1 0 1at 2771.540 kb on + strandat 2771.540 kb on + strandat 2771.540 kb on + strandat 2771.540 kb on + strandat 2771.541 kb on - strandat 2771.579 kb on + strandat 2772.048 kb on + strandat 2772.049 kb on - strandat 2772.049 kb on - strandat 2772.051 kb on + strandat 2772.052 kb on - strandat 2772.052 kb on - strandat 2772.052 kb on - strandat 2772.114 kb on + strandat 2772.114 kb on + strandat 2772.114 kb on + strandat 2772.115 kb on - strandat 2772.115 kb on - strandat 2772.115 kb on - strandat 2772.419 kb on + strandat 2772.448 kb on + strandat 2772.448 kb on + strandat 2772.525 kb on + strandat 2772.526 kb on - strandat 2772.526 kb on - strandat 2772.529 kb on + strandat 2772.529 kb on + strandat 2772.529 kb on + strandat 2772.529 kb on + strandat 2772.530 kb on - strandat 2772.530 kb on - strandat 2772.530 kb on - strandat 2772.530 kb on - strandat 2772.530 kb on - strandat 2773.021 kb on - strand, within AZOBR_RS13140at 2773.119 kb on + strandat 2773.119 kb on + strandat 2773.119 kb on + strandat 2773.167 kb on + strandat 2773.331 kb on - strand, within AZOBR_RS13145at 2773.336 kb on + strand, within AZOBR_RS13145at 2773.337 kb on - strand, within AZOBR_RS13145

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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2,771,540 + -0.1
2,771,540 + -2.5
2,771,540 + -1.6
2,771,540 + +0.1
2,771,541 - -1.2
2,771,579 + -2.8
2,772,048 + +1.3
2,772,049 - +0.2
2,772,049 - -1.1
2,772,051 + -0.1
2,772,052 - +1.2
2,772,052 - -1.9
2,772,052 - +0.0
2,772,114 + +0.6
2,772,114 + -0.1
2,772,114 + -0.0
2,772,115 - -0.2
2,772,115 - +0.0
2,772,115 - -0.7
2,772,419 + -3.0
2,772,448 + +0.4
2,772,448 + +0.4
2,772,525 + -0.4
2,772,526 - -0.3
2,772,526 - -0.5
2,772,529 + +1.0
2,772,529 + -0.8
2,772,529 + -0.2
2,772,529 + +0.4
2,772,530 - +0.3
2,772,530 - -2.0
2,772,530 - +0.5
2,772,530 - +0.5
2,772,530 - -0.5
2,773,021 - AZOBR_RS13140 0.77 +0.1
2,773,119 + -1.3
2,773,119 + +0.2
2,773,119 + -0.5
2,773,167 + +0.6
2,773,331 - AZOBR_RS13145 0.17 +0.3
2,773,336 + AZOBR_RS13145 0.17 -0.0
2,773,337 - AZOBR_RS13145 0.17 -1.4

Or see this region's nucleotide sequence