Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS11175

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS11170 and AZOBR_RS11175 are separated by 53 nucleotidesAZOBR_RS11175 and AZOBR_RS11185 are separated by 688 nucleotides AZOBR_RS11170: AZOBR_RS11170 - membrane protein, at 2,348,349 to 2,351,819 _RS11170 AZOBR_RS11175: AZOBR_RS11175 - flagellar motor protein MotB, at 2,351,873 to 2,352,562 _RS11175 AZOBR_RS11185: AZOBR_RS11185 - chemotaxis protein CheZ, at 2,353,251 to 2,353,967 _RS11185 Position (kb) 2351 2352 2353Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2351.248 kb on + strand, within AZOBR_RS11170at 2351.249 kb on - strand, within AZOBR_RS11170at 2351.249 kb on - strand, within AZOBR_RS11170at 2351.552 kb on - strandat 2351.644 kb on + strandat 2351.800 kb on + strandat 2351.976 kb on + strand, within AZOBR_RS11175at 2351.976 kb on + strand, within AZOBR_RS11175at 2351.976 kb on + strand, within AZOBR_RS11175at 2351.977 kb on - strand, within AZOBR_RS11175at 2352.282 kb on + strand, within AZOBR_RS11175at 2352.283 kb on - strand, within AZOBR_RS11175at 2352.283 kb on - strand, within AZOBR_RS11175at 2352.304 kb on - strand, within AZOBR_RS11175at 2352.304 kb on - strand, within AZOBR_RS11175at 2352.441 kb on + strand, within AZOBR_RS11175at 2352.441 kb on + strand, within AZOBR_RS11175at 2352.442 kb on - strand, within AZOBR_RS11175at 2352.442 kb on - strand, within AZOBR_RS11175at 2353.050 kb on + strandat 2353.050 kb on + strandat 2353.051 kb on - strandat 2353.051 kb on - strandat 2353.252 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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2,351,248 + AZOBR_RS11170 0.84 -4.4
2,351,249 - AZOBR_RS11170 0.84 -4.0
2,351,249 - AZOBR_RS11170 0.84 -4.0
2,351,552 - -4.5
2,351,644 + -1.3
2,351,800 + -0.1
2,351,976 + AZOBR_RS11175 0.15 +0.6
2,351,976 + AZOBR_RS11175 0.15 -0.3
2,351,976 + AZOBR_RS11175 0.15 +1.2
2,351,977 - AZOBR_RS11175 0.15 -0.4
2,352,282 + AZOBR_RS11175 0.59 +0.5
2,352,283 - AZOBR_RS11175 0.59 +0.5
2,352,283 - AZOBR_RS11175 0.59 -0.1
2,352,304 - AZOBR_RS11175 0.62 -0.4
2,352,304 - AZOBR_RS11175 0.62 +0.0
2,352,441 + AZOBR_RS11175 0.82 -1.8
2,352,441 + AZOBR_RS11175 0.82 -1.6
2,352,442 - AZOBR_RS11175 0.82 -1.5
2,352,442 - AZOBR_RS11175 0.82 -0.1
2,353,050 + -1.3
2,353,050 + -1.1
2,353,051 - +0.7
2,353,051 - +1.7
2,353,252 + -3.9

Or see this region's nucleotide sequence