Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09815

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09805 and AZOBR_RS09810 overlap by 1 nucleotidesAZOBR_RS09810 and AZOBR_RS09815 are separated by 163 nucleotidesAZOBR_RS09815 and AZOBR_RS09820 are separated by 31 nucleotidesAZOBR_RS09820 and AZOBR_RS09825 are separated by 65 nucleotidesAZOBR_RS09825 and AZOBR_RS09830 are separated by 137 nucleotides AZOBR_RS09805: AZOBR_RS09805 - peptide chain release factor I, at 2,056,491 to 2,056,910 _RS09805 AZOBR_RS09810: AZOBR_RS09810 - DSBA oxidoreductase, at 2,056,910 to 2,057,563 _RS09810 AZOBR_RS09815: AZOBR_RS09815 - hypothetical protein, at 2,057,727 to 2,058,185 _RS09815 AZOBR_RS09820: AZOBR_RS09820 - hypothetical protein, at 2,058,217 to 2,058,609 _RS09820 AZOBR_RS09825: AZOBR_RS09825 - hypothetical protein, at 2,058,675 to 2,058,899 _RS09825 AZOBR_RS09830: AZOBR_RS09830 - esterase, at 2,059,037 to 2,060,050 _RS09830 Position (kb) 2057 2058 2059Strain fitness (log2 ratio) -2 -1 0 1 2at 2057.022 kb on + strand, within AZOBR_RS09810at 2057.397 kb on + strand, within AZOBR_RS09810at 2057.520 kb on + strandat 2057.520 kb on + strandat 2057.520 kb on + strandat 2057.520 kb on + strandat 2057.521 kb on - strandat 2057.521 kb on - strandat 2057.521 kb on - strandat 2057.564 kb on - strandat 2057.564 kb on - strandat 2057.572 kb on + strandat 2058.366 kb on - strand, within AZOBR_RS09820at 2058.371 kb on + strand, within AZOBR_RS09820at 2058.371 kb on + strand, within AZOBR_RS09820at 2058.371 kb on + strand, within AZOBR_RS09820at 2058.372 kb on - strand, within AZOBR_RS09820at 2058.393 kb on - strand, within AZOBR_RS09820at 2058.410 kb on + strand, within AZOBR_RS09820at 2058.411 kb on - strand, within AZOBR_RS09820at 2058.411 kb on - strand, within AZOBR_RS09820at 2058.662 kb on - strandat 2058.662 kb on - strandat 2058.662 kb on - strandat 2058.784 kb on + strand, within AZOBR_RS09825at 2058.784 kb on + strand, within AZOBR_RS09825at 2058.785 kb on - strand, within AZOBR_RS09825at 2058.785 kb on - strand, within AZOBR_RS09825at 2059.126 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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2,057,022 + AZOBR_RS09810 0.17 +0.2
2,057,397 + AZOBR_RS09810 0.74 +1.4
2,057,520 + +0.4
2,057,520 + -1.5
2,057,520 + -0.5
2,057,520 + -0.3
2,057,521 - -2.1
2,057,521 - -0.3
2,057,521 - -0.4
2,057,564 - +0.4
2,057,564 - +0.1
2,057,572 + -0.2
2,058,366 - AZOBR_RS09820 0.38 -0.7
2,058,371 + AZOBR_RS09820 0.39 +2.2
2,058,371 + AZOBR_RS09820 0.39 +2.2
2,058,371 + AZOBR_RS09820 0.39 +0.5
2,058,372 - AZOBR_RS09820 0.39 -1.0
2,058,393 - AZOBR_RS09820 0.45 -1.4
2,058,410 + AZOBR_RS09820 0.49 +0.7
2,058,411 - AZOBR_RS09820 0.49 -2.0
2,058,411 - AZOBR_RS09820 0.49 -2.3
2,058,662 - +1.2
2,058,662 - -0.2
2,058,662 - +0.3
2,058,784 + AZOBR_RS09825 0.48 -1.3
2,058,784 + AZOBR_RS09825 0.48 -0.8
2,058,785 - AZOBR_RS09825 0.49 -1.3
2,058,785 - AZOBR_RS09825 0.49 -0.7
2,059,126 - -2.1

Or see this region's nucleotide sequence