Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08535

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS08530 and AZOBR_RS08535 are separated by 15 nucleotidesAZOBR_RS08535 and AZOBR_RS08540 overlap by 4 nucleotidesAZOBR_RS08540 and AZOBR_RS08545 overlap by 4 nucleotides AZOBR_RS08530: AZOBR_RS08530 - 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, at 1,789,151 to 1,790,761 _RS08530 AZOBR_RS08535: AZOBR_RS08535 - xanthine dehydrogenase, at 1,790,777 to 1,791,493 _RS08535 AZOBR_RS08540: AZOBR_RS08540 - putative xanthine and CO dehydrogenases maturation factor XdhC/CoxF family, at 1,791,490 to 1,791,804 _RS08540 AZOBR_RS08545: AZOBR_RS08545 - von Willebrand factor A, at 1,791,801 to 1,793,000 _RS08545 Position (kb) 1790 1791 1792Strain fitness (log2 ratio) -2 -1 0 1 2at 1790.365 kb on + strand, within AZOBR_RS08530at 1790.973 kb on + strand, within AZOBR_RS08535at 1790.973 kb on + strand, within AZOBR_RS08535at 1790.974 kb on - strand, within AZOBR_RS08535at 1790.974 kb on - strand, within AZOBR_RS08535at 1791.393 kb on + strand, within AZOBR_RS08535at 1791.509 kb on + strandat 1791.509 kb on + strandat 1791.509 kb on + strandat 1791.509 kb on + strandat 1791.510 kb on - strandat 1791.510 kb on - strandat 1791.510 kb on - strandat 1791.793 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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1,790,365 + AZOBR_RS08530 0.75 +0.7
1,790,973 + AZOBR_RS08535 0.27 +0.6
1,790,973 + AZOBR_RS08535 0.27 +0.8
1,790,974 - AZOBR_RS08535 0.27 +0.6
1,790,974 - AZOBR_RS08535 0.27 -0.0
1,791,393 + AZOBR_RS08535 0.86 +0.2
1,791,509 + -2.3
1,791,509 + +2.2
1,791,509 + +1.5
1,791,509 + +0.2
1,791,510 - -0.2
1,791,510 - +1.4
1,791,510 - -0.9
1,791,793 - -2.2

Or see this region's nucleotide sequence