Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS00700

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS00695 and AZOBR_RS00700 are separated by 101 nucleotidesAZOBR_RS00700 and AZOBR_RS00705 are separated by 399 nucleotides AZOBR_RS00695: AZOBR_RS00695 - transporter, at 137,157 to 138,806 _RS00695 AZOBR_RS00700: AZOBR_RS00700 - transporter, at 138,908 to 140,587 _RS00700 AZOBR_RS00705: AZOBR_RS00705 - cytochrome C biogenesis protein CcmA, at 140,987 to 141,628 _RS00705 Position (kb) 138 139 140 141Strain fitness (log2 ratio) -2 -1 0 1 2at 138.316 kb on + strand, within AZOBR_RS00695at 138.316 kb on + strand, within AZOBR_RS00695at 138.317 kb on - strand, within AZOBR_RS00695at 138.592 kb on + strand, within AZOBR_RS00695at 138.592 kb on + strand, within AZOBR_RS00695at 138.592 kb on + strand, within AZOBR_RS00695at 138.593 kb on - strand, within AZOBR_RS00695at 138.735 kb on + strandat 138.735 kb on + strandat 138.735 kb on + strandat 138.735 kb on + strandat 138.736 kb on - strandat 138.909 kb on + strandat 138.910 kb on - strandat 138.910 kb on - strandat 138.959 kb on - strandat 138.964 kb on + strandat 138.965 kb on - strandat 138.969 kb on + strandat 138.969 kb on + strandat 139.080 kb on + strand, within AZOBR_RS00700at 139.080 kb on + strand, within AZOBR_RS00700at 139.081 kb on - strand, within AZOBR_RS00700at 139.389 kb on + strand, within AZOBR_RS00700at 139.389 kb on + strand, within AZOBR_RS00700at 139.389 kb on + strand, within AZOBR_RS00700at 139.389 kb on + strand, within AZOBR_RS00700at 139.389 kb on + strand, within AZOBR_RS00700at 139.390 kb on - strand, within AZOBR_RS00700at 139.390 kb on - strand, within AZOBR_RS00700at 139.390 kb on - strand, within AZOBR_RS00700at 139.390 kb on - strand, within AZOBR_RS00700at 139.615 kb on - strand, within AZOBR_RS00700at 140.343 kb on + strand, within AZOBR_RS00700at 140.343 kb on + strand, within AZOBR_RS00700at 140.344 kb on - strand, within AZOBR_RS00700at 140.344 kb on - strand, within AZOBR_RS00700at 140.633 kb on - strandat 140.677 kb on - strandat 140.787 kb on - strandat 140.953 kb on + strandat 140.953 kb on + strandat 140.954 kb on - strandat 140.954 kb on - strandat 140.954 kb on - strandat 140.955 kb on + strandat 140.955 kb on + strandat 140.955 kb on + strandat 140.955 kb on + strandat 140.955 kb on + strandat 140.955 kb on + strandat 140.956 kb on - strandat 140.956 kb on - strandat 140.956 kb on - strandat 140.956 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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138,316 + AZOBR_RS00695 0.70 +0.9
138,316 + AZOBR_RS00695 0.70 -1.8
138,317 - AZOBR_RS00695 0.70 -0.4
138,592 + AZOBR_RS00695 0.87 +1.5
138,592 + AZOBR_RS00695 0.87 +1.1
138,592 + AZOBR_RS00695 0.87 -0.3
138,593 - AZOBR_RS00695 0.87 -2.0
138,735 + -1.3
138,735 + -0.7
138,735 + +0.9
138,735 + +0.1
138,736 - -2.1
138,909 + +0.3
138,910 - +0.9
138,910 - +0.6
138,959 - -0.5
138,964 + -0.9
138,965 - -2.1
138,969 + -1.2
138,969 + -0.9
139,080 + AZOBR_RS00700 0.10 +1.9
139,080 + AZOBR_RS00700 0.10 -0.3
139,081 - AZOBR_RS00700 0.10 +1.1
139,389 + AZOBR_RS00700 0.29 -2.6
139,389 + AZOBR_RS00700 0.29 -1.3
139,389 + AZOBR_RS00700 0.29 -0.2
139,389 + AZOBR_RS00700 0.29 -0.4
139,389 + AZOBR_RS00700 0.29 +0.0
139,390 - AZOBR_RS00700 0.29 +0.5
139,390 - AZOBR_RS00700 0.29 -1.3
139,390 - AZOBR_RS00700 0.29 +0.8
139,390 - AZOBR_RS00700 0.29 +0.2
139,615 - AZOBR_RS00700 0.42 -0.4
140,343 + AZOBR_RS00700 0.85 -0.2
140,343 + AZOBR_RS00700 0.85 -0.3
140,344 - AZOBR_RS00700 0.85 +0.1
140,344 - AZOBR_RS00700 0.85 -1.0
140,633 - +0.4
140,677 - -0.0
140,787 - +0.9
140,953 + -0.7
140,953 + -0.1
140,954 - -1.2
140,954 - -0.9
140,954 - -1.5
140,955 + +0.3
140,955 + -1.2
140,955 + +0.3
140,955 + +0.2
140,955 + +0.1
140,955 + +1.2
140,956 - -2.1
140,956 - -1.0
140,956 - -2.2
140,956 - -0.6

Or see this region's nucleotide sequence