Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS00585

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS00580 and AZOBR_RS00585 are separated by 44 nucleotides AZOBR_RS00580: AZOBR_RS00580 - aminoglycoside phosphotransferase, at 115,253 to 116,266 _RS00580 AZOBR_RS00585: AZOBR_RS00585 - mannose-1-phosphate guanylyltransferase, at 116,311 to 117,048 _RS00585 Position (kb) 116 117 118Strain fitness (log2 ratio) -3 -2 -1 0 1at 115.353 kb on - strandat 115.583 kb on + strand, within AZOBR_RS00580at 115.712 kb on + strand, within AZOBR_RS00580at 115.712 kb on + strand, within AZOBR_RS00580at 115.712 kb on + strand, within AZOBR_RS00580at 115.712 kb on + strand, within AZOBR_RS00580at 115.712 kb on + strand, within AZOBR_RS00580at 115.713 kb on - strand, within AZOBR_RS00580at 115.713 kb on - strand, within AZOBR_RS00580at 115.713 kb on - strand, within AZOBR_RS00580at 115.713 kb on - strand, within AZOBR_RS00580at 115.713 kb on - strand, within AZOBR_RS00580at 115.713 kb on - strand, within AZOBR_RS00580at 115.713 kb on - strandat 115.832 kb on + strand, within AZOBR_RS00580at 115.832 kb on + strand, within AZOBR_RS00580at 115.833 kb on - strand, within AZOBR_RS00580at 115.833 kb on - strand, within AZOBR_RS00580at 116.049 kb on - strand, within AZOBR_RS00580at 116.127 kb on - strand, within AZOBR_RS00580at 116.127 kb on - strand, within AZOBR_RS00580at 116.268 kb on + strandat 116.268 kb on + strandat 116.269 kb on - strandat 116.269 kb on - strandat 116.269 kb on - strandat 116.488 kb on + strand, within AZOBR_RS00585at 116.488 kb on + strand, within AZOBR_RS00585at 116.488 kb on + strand, within AZOBR_RS00585at 116.489 kb on - strand, within AZOBR_RS00585at 116.623 kb on + strand, within AZOBR_RS00585at 116.624 kb on - strand, within AZOBR_RS00585at 116.624 kb on - strand, within AZOBR_RS00585at 116.752 kb on + strand, within AZOBR_RS00585at 116.752 kb on + strand, within AZOBR_RS00585at 116.753 kb on - strand, within AZOBR_RS00585at 116.753 kb on - strand, within AZOBR_RS00585at 116.771 kb on - strand, within AZOBR_RS00585at 116.834 kb on - strand, within AZOBR_RS00585at 117.133 kb on + strandat 117.133 kb on + strandat 117.133 kb on + strandat 117.134 kb on - strandat 117.134 kb on - strandat 117.157 kb on - strandat 117.650 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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115,353 - +0.5
115,583 + AZOBR_RS00580 0.33 -0.0
115,712 + AZOBR_RS00580 0.45 +0.0
115,712 + AZOBR_RS00580 0.45 -1.4
115,712 + AZOBR_RS00580 0.45 -1.0
115,712 + AZOBR_RS00580 0.45 -0.4
115,712 + AZOBR_RS00580 0.45 +0.7
115,713 - AZOBR_RS00580 0.45 -0.0
115,713 - AZOBR_RS00580 0.45 +1.4
115,713 - AZOBR_RS00580 0.45 -0.2
115,713 - AZOBR_RS00580 0.45 -0.4
115,713 - AZOBR_RS00580 0.45 +0.5
115,713 - AZOBR_RS00580 0.45 -0.0
115,713 - +0.5
115,832 + AZOBR_RS00580 0.57 +0.0
115,832 + AZOBR_RS00580 0.57 +0.0
115,833 - AZOBR_RS00580 0.57 -0.5
115,833 - AZOBR_RS00580 0.57 +0.1
116,049 - AZOBR_RS00580 0.79 +0.4
116,127 - AZOBR_RS00580 0.86 -0.5
116,127 - AZOBR_RS00580 0.86 +0.7
116,268 + -2.1
116,268 + -0.0
116,269 - -0.3
116,269 - -2.1
116,269 - -0.8
116,488 + AZOBR_RS00585 0.24 -1.0
116,488 + AZOBR_RS00585 0.24 -2.0
116,488 + AZOBR_RS00585 0.24 -0.9
116,489 - AZOBR_RS00585 0.24 -0.7
116,623 + AZOBR_RS00585 0.42 -0.3
116,624 - AZOBR_RS00585 0.42 -1.3
116,624 - AZOBR_RS00585 0.42 -1.2
116,752 + AZOBR_RS00585 0.60 -1.7
116,752 + AZOBR_RS00585 0.60 -1.6
116,753 - AZOBR_RS00585 0.60 -0.7
116,753 - AZOBR_RS00585 0.60 -0.3
116,771 - AZOBR_RS00585 0.62 -1.0
116,834 - AZOBR_RS00585 0.71 -2.8
117,133 + -2.8
117,133 + +0.0
117,133 + +0.4
117,134 - -0.0
117,134 - +0.2
117,157 - -1.8
117,650 - +0.1

Or see this region's nucleotide sequence