Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS27930 and AZOBR_RS27935 are separated by 56 nucleotides AZOBR_RS27935 and AZOBR_RS27940 are separated by 27 nucleotides
AZOBR_RS27930: AZOBR_RS27930 - AP endonuclease, at 436,107 to 437,162
_RS27930
AZOBR_RS27935: AZOBR_RS27935 - ABC transporter substrate-binding protein, at 437,219 to 438,172
_RS27935
AZOBR_RS27940: AZOBR_RS27940 - ABC transporter permease, at 438,200 to 439,189
_RS27940
Position (kb) 437
438
439 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 436.292 kb on - strand, within AZOBR_RS27930 at 436.459 kb on + strand, within AZOBR_RS27930 at 436.471 kb on + strand, within AZOBR_RS27930 at 436.721 kb on - strand, within AZOBR_RS27930 at 436.721 kb on - strand at 436.727 kb on - strand, within AZOBR_RS27930 at 436.886 kb on - strand, within AZOBR_RS27930 at 437.239 kb on - strand at 437.242 kb on - strand at 437.289 kb on + strand at 437.289 kb on + strand at 437.289 kb on + strand at 437.290 kb on - strand at 437.290 kb on - strand at 437.290 kb on - strand at 437.599 kb on - strand, within AZOBR_RS27935 at 437.778 kb on + strand, within AZOBR_RS27935 at 437.778 kb on + strand, within AZOBR_RS27935 at 437.778 kb on + strand, within AZOBR_RS27935 at 437.778 kb on + strand, within AZOBR_RS27935 at 437.779 kb on - strand, within AZOBR_RS27935 at 437.779 kb on - strand, within AZOBR_RS27935 at 438.251 kb on + strand at 438.252 kb on - strand at 438.276 kb on + strand at 438.277 kb on - strand at 438.465 kb on + strand, within AZOBR_RS27940 at 438.466 kb on - strand, within AZOBR_RS27940 at 438.466 kb on - strand, within AZOBR_RS27940 at 438.466 kb on - strand, within AZOBR_RS27940 at 438.546 kb on + strand, within AZOBR_RS27940 at 438.606 kb on + strand, within AZOBR_RS27940 at 438.607 kb on - strand, within AZOBR_RS27940 at 438.607 kb on - strand, within AZOBR_RS27940 at 438.682 kb on - strand, within AZOBR_RS27940 at 438.682 kb on - strand, within AZOBR_RS27940 at 438.684 kb on + strand, within AZOBR_RS27940 at 438.684 kb on + strand, within AZOBR_RS27940 at 438.684 kb on + strand, within AZOBR_RS27940 at 438.747 kb on + strand, within AZOBR_RS27940 at 438.748 kb on - strand, within AZOBR_RS27940 at 438.748 kb on - strand, within AZOBR_RS27940 at 438.748 kb on - strand, within AZOBR_RS27940 at 439.140 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 436,292 - AZOBR_RS27930 0.18 -0.8 436,459 + AZOBR_RS27930 0.33 -0.6 436,471 + AZOBR_RS27930 0.34 +0.4 436,721 - AZOBR_RS27930 0.58 +0.1 436,721 - +2.0 436,727 - AZOBR_RS27930 0.59 -0.4 436,886 - AZOBR_RS27930 0.74 -3.3 437,239 - -0.4 437,242 - +0.6 437,289 + -1.2 437,289 + -0.6 437,289 + -0.4 437,290 - -0.9 437,290 - +0.1 437,290 - -0.4 437,599 - AZOBR_RS27935 0.40 +0.4 437,778 + AZOBR_RS27935 0.59 +0.8 437,778 + AZOBR_RS27935 0.59 -0.4 437,778 + AZOBR_RS27935 0.59 -0.6 437,778 + AZOBR_RS27935 0.59 +0.3 437,779 - AZOBR_RS27935 0.59 +1.0 437,779 - AZOBR_RS27935 0.59 -2.7 438,251 + +2.2 438,252 - +0.8 438,276 + +2.0 438,277 - -0.1 438,465 + AZOBR_RS27940 0.27 +1.0 438,466 - AZOBR_RS27940 0.27 +1.3 438,466 - AZOBR_RS27940 0.27 -0.5 438,466 - AZOBR_RS27940 0.27 +0.2 438,546 + AZOBR_RS27940 0.35 -0.0 438,606 + AZOBR_RS27940 0.41 +1.5 438,607 - AZOBR_RS27940 0.41 -1.0 438,607 - AZOBR_RS27940 0.41 +0.3 438,682 - AZOBR_RS27940 0.49 -0.5 438,682 - AZOBR_RS27940 0.49 +0.3 438,684 + AZOBR_RS27940 0.49 -1.7 438,684 + AZOBR_RS27940 0.49 -0.3 438,684 + AZOBR_RS27940 0.49 -0.0 438,747 + AZOBR_RS27940 0.55 -1.5 438,748 - AZOBR_RS27940 0.55 -0.6 438,748 - AZOBR_RS27940 0.55 -0.2 438,748 - AZOBR_RS27940 0.55 -0.6 439,140 + +0.3
Or see this region's nucleotide sequence