Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS27635

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS27630 and AZOBR_RS27635 overlap by 1 nucleotidesAZOBR_RS27635 and AZOBR_RS27640 are separated by 66 nucleotides AZOBR_RS27630: AZOBR_RS27630 - CoA-transferase, at 361,198 to 362,391 _RS27630 AZOBR_RS27635: AZOBR_RS27635 - enoyl-CoA hydratase, at 362,391 to 363,212 _RS27635 AZOBR_RS27640: AZOBR_RS27640 - ABC transporter substrate-binding protein, at 363,279 to 364,250 _RS27640 Position (kb) 362 363 364Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 361.894 kb on + strand, within AZOBR_RS27630at 362.152 kb on + strand, within AZOBR_RS27630at 362.153 kb on - strand, within AZOBR_RS27630at 362.153 kb on - strand, within AZOBR_RS27630at 363.013 kb on - strand, within AZOBR_RS27635at 363.013 kb on - strand, within AZOBR_RS27635at 363.013 kb on - strand, within AZOBR_RS27635at 363.210 kb on + strandat 363.211 kb on - strandat 363.246 kb on + strandat 363.246 kb on + strandat 363.246 kb on + strandat 363.247 kb on - strandat 363.391 kb on - strand, within AZOBR_RS27640at 363.391 kb on - strand, within AZOBR_RS27640at 363.618 kb on + strand, within AZOBR_RS27640at 363.619 kb on - strand, within AZOBR_RS27640at 363.747 kb on + strand, within AZOBR_RS27640at 363.748 kb on - strand, within AZOBR_RS27640at 363.748 kb on - strand, within AZOBR_RS27640at 363.900 kb on + strand, within AZOBR_RS27640at 363.901 kb on - strand, within AZOBR_RS27640at 364.002 kb on + strand, within AZOBR_RS27640at 364.003 kb on - strand, within AZOBR_RS27640

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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361,894 + AZOBR_RS27630 0.58 -0.6
362,152 + AZOBR_RS27630 0.80 -0.5
362,153 - AZOBR_RS27630 0.80 -1.9
362,153 - AZOBR_RS27630 0.80 -0.3
363,013 - AZOBR_RS27635 0.76 +0.5
363,013 - AZOBR_RS27635 0.76 -1.9
363,013 - AZOBR_RS27635 0.76 -1.0
363,210 + -0.1
363,211 - +1.9
363,246 + +0.2
363,246 + -0.7
363,246 + +0.4
363,247 - -0.1
363,391 - AZOBR_RS27640 0.12 -0.1
363,391 - AZOBR_RS27640 0.12 -0.4
363,618 + AZOBR_RS27640 0.35 +0.4
363,619 - AZOBR_RS27640 0.35 -2.1
363,747 + AZOBR_RS27640 0.48 -0.6
363,748 - AZOBR_RS27640 0.48 -0.9
363,748 - AZOBR_RS27640 0.48 -4.4
363,900 + AZOBR_RS27640 0.64 -0.7
363,901 - AZOBR_RS27640 0.64 +1.1
364,002 + AZOBR_RS27640 0.74 -2.5
364,003 - AZOBR_RS27640 0.74 +0.2

Or see this region's nucleotide sequence