Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS26810 and AZOBR_RS26815 are separated by 173 nucleotides AZOBR_RS26815 and AZOBR_RS26820 are separated by 30 nucleotides
AZOBR_RS26810: AZOBR_RS26810 - quinone oxidoreductase, at 164,830 to 165,810
_RS26810
AZOBR_RS26815: AZOBR_RS26815 - 3-hydroxyisobutyrate dehydrogenase, at 165,984 to 166,883
_RS26815
AZOBR_RS26820: AZOBR_RS26820 - ABC transporter permease, at 166,914 to 168,113
_RS26820
Position (kb) 165
166
167 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 165.168 kb on - strand, within AZOBR_RS26810 at 165.168 kb on - strand, within AZOBR_RS26810 at 165.168 kb on - strand, within AZOBR_RS26810 at 165.420 kb on - strand, within AZOBR_RS26810 at 165.420 kb on - strand, within AZOBR_RS26810 at 165.674 kb on + strand, within AZOBR_RS26810 at 165.674 kb on + strand, within AZOBR_RS26810 at 165.675 kb on - strand, within AZOBR_RS26810 at 165.675 kb on - strand, within AZOBR_RS26810 at 165.947 kb on - strand at 165.958 kb on + strand at 165.959 kb on - strand at 165.959 kb on - strand at 165.970 kb on + strand at 165.970 kb on + strand at 165.970 kb on + strand at 165.971 kb on - strand at 166.070 kb on - strand at 166.070 kb on - strand at 166.180 kb on + strand, within AZOBR_RS26815 at 166.180 kb on + strand, within AZOBR_RS26815 at 166.228 kb on + strand, within AZOBR_RS26815 at 166.228 kb on + strand, within AZOBR_RS26815 at 166.228 kb on + strand, within AZOBR_RS26815 at 166.228 kb on + strand, within AZOBR_RS26815 at 166.228 kb on + strand, within AZOBR_RS26815 at 166.229 kb on - strand, within AZOBR_RS26815 at 166.229 kb on - strand, within AZOBR_RS26815 at 166.229 kb on - strand, within AZOBR_RS26815 at 166.276 kb on + strand, within AZOBR_RS26815 at 166.276 kb on + strand, within AZOBR_RS26815 at 166.276 kb on + strand, within AZOBR_RS26815 at 166.277 kb on - strand, within AZOBR_RS26815 at 166.660 kb on + strand, within AZOBR_RS26815 at 166.993 kb on + strand at 166.993 kb on + strand at 166.993 kb on + strand at 166.993 kb on + strand at 166.993 kb on + strand at 166.994 kb on - strand at 166.994 kb on - strand at 166.994 kb on - strand at 167.044 kb on + strand, within AZOBR_RS26820 at 167.044 kb on + strand, within AZOBR_RS26820 at 167.045 kb on - strand, within AZOBR_RS26820 at 167.045 kb on - strand, within AZOBR_RS26820 at 167.045 kb on - strand, within AZOBR_RS26820 at 167.179 kb on + strand, within AZOBR_RS26820 at 167.179 kb on + strand, within AZOBR_RS26820 at 167.179 kb on + strand, within AZOBR_RS26820 at 167.197 kb on + strand, within AZOBR_RS26820 at 167.197 kb on + strand, within AZOBR_RS26820 at 167.290 kb on + strand, within AZOBR_RS26820 at 167.291 kb on - strand, within AZOBR_RS26820 at 167.538 kb on + strand, within AZOBR_RS26820 at 167.538 kb on + strand, within AZOBR_RS26820 at 167.603 kb on - strand, within AZOBR_RS26820 at 167.603 kb on - strand, within AZOBR_RS26820 at 167.603 kb on - strand, within AZOBR_RS26820 at 167.677 kb on + strand, within AZOBR_RS26820 at 167.677 kb on + strand, within AZOBR_RS26820 at 167.678 kb on - strand, within AZOBR_RS26820 at 167.678 kb on - strand, within AZOBR_RS26820
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 165,168 - AZOBR_RS26810 0.34 -0.5 165,168 - AZOBR_RS26810 0.34 -0.7 165,168 - AZOBR_RS26810 0.34 -0.2 165,420 - AZOBR_RS26810 0.60 -3.6 165,420 - AZOBR_RS26810 0.60 +1.0 165,674 + AZOBR_RS26810 0.86 +1.7 165,674 + AZOBR_RS26810 0.86 -0.2 165,675 - AZOBR_RS26810 0.86 -0.4 165,675 - AZOBR_RS26810 0.86 -0.1 165,947 - +0.6 165,958 + -0.7 165,959 - -1.2 165,959 - -0.4 165,970 + -2.4 165,970 + +0.4 165,970 + -0.4 165,971 - +0.1 166,070 - +0.9 166,070 - -0.2 166,180 + AZOBR_RS26815 0.22 +1.0 166,180 + AZOBR_RS26815 0.22 -1.4 166,228 + AZOBR_RS26815 0.27 +1.4 166,228 + AZOBR_RS26815 0.27 +0.3 166,228 + AZOBR_RS26815 0.27 -0.7 166,228 + AZOBR_RS26815 0.27 +0.9 166,228 + AZOBR_RS26815 0.27 +1.4 166,229 - AZOBR_RS26815 0.27 -0.7 166,229 - AZOBR_RS26815 0.27 +0.2 166,229 - AZOBR_RS26815 0.27 +0.3 166,276 + AZOBR_RS26815 0.32 +0.1 166,276 + AZOBR_RS26815 0.32 -0.6 166,276 + AZOBR_RS26815 0.32 +1.2 166,277 - AZOBR_RS26815 0.33 +1.1 166,660 + AZOBR_RS26815 0.75 +0.4 166,993 + -0.2 166,993 + +0.7 166,993 + +0.6 166,993 + +0.7 166,993 + +0.9 166,994 - -0.4 166,994 - -1.0 166,994 - -0.5 167,044 + AZOBR_RS26820 0.11 +1.9 167,044 + AZOBR_RS26820 0.11 -3.4 167,045 - AZOBR_RS26820 0.11 -0.9 167,045 - AZOBR_RS26820 0.11 -1.1 167,045 - AZOBR_RS26820 0.11 -1.8 167,179 + AZOBR_RS26820 0.22 +0.7 167,179 + AZOBR_RS26820 0.22 +0.8 167,179 + AZOBR_RS26820 0.22 +0.8 167,197 + AZOBR_RS26820 0.24 +0.9 167,197 + AZOBR_RS26820 0.24 -1.2 167,290 + AZOBR_RS26820 0.31 -1.9 167,291 - AZOBR_RS26820 0.31 -3.0 167,538 + AZOBR_RS26820 0.52 +0.9 167,538 + AZOBR_RS26820 0.52 -0.9 167,603 - AZOBR_RS26820 0.57 -0.1 167,603 - AZOBR_RS26820 0.57 -0.6 167,603 - AZOBR_RS26820 0.57 -0.6 167,677 + AZOBR_RS26820 0.64 +0.3 167,677 + AZOBR_RS26820 0.64 -0.6 167,678 - AZOBR_RS26820 0.64 +0.7 167,678 - AZOBR_RS26820 0.64 +1.3
Or see this region's nucleotide sequence