Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS22520 and AZOBR_RS22525 are separated by 99 nucleotides AZOBR_RS22525 and AZOBR_RS22530 are separated by 61 nucleotides AZOBR_RS22530 and AZOBR_RS22535 are separated by 313 nucleotides
AZOBR_RS22520: AZOBR_RS22520 - hypothetical protein, at 63,526 to 63,918
_RS22520
AZOBR_RS22525: AZOBR_RS22525 - flavin-nucleotide-binding protein, at 64,018 to 64,743
_RS22525
AZOBR_RS22530: AZOBR_RS22530 - transcriptional regulator, at 64,805 to 66,286
_RS22530
AZOBR_RS22535: AZOBR_RS22535 - asparagine synthase, at 66,600 to 68,375
_RS22535
Position (kb) 64
65
66
67 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 63.959 kb on - strand at 64.181 kb on + strand, within AZOBR_RS22525 at 64.182 kb on - strand, within AZOBR_RS22525 at 64.182 kb on - strand, within AZOBR_RS22525 at 64.182 kb on - strand, within AZOBR_RS22525 at 64.182 kb on - strand, within AZOBR_RS22525 at 64.182 kb on - strand, within AZOBR_RS22525 at 64.328 kb on + strand, within AZOBR_RS22525 at 64.329 kb on - strand, within AZOBR_RS22525 at 64.418 kb on + strand, within AZOBR_RS22525 at 64.545 kb on - strand, within AZOBR_RS22525 at 64.586 kb on + strand, within AZOBR_RS22525 at 64.587 kb on - strand, within AZOBR_RS22525 at 64.587 kb on - strand, within AZOBR_RS22525 at 64.608 kb on - strand, within AZOBR_RS22525 at 64.665 kb on - strand, within AZOBR_RS22525 at 64.716 kb on - strand at 64.716 kb on - strand at 64.716 kb on - strand at 64.789 kb on + strand at 64.919 kb on + strand at 65.037 kb on - strand, within AZOBR_RS22530 at 65.343 kb on - strand, within AZOBR_RS22530 at 65.597 kb on + strand, within AZOBR_RS22530 at 65.597 kb on + strand, within AZOBR_RS22530 at 65.708 kb on + strand, within AZOBR_RS22530 at 65.783 kb on + strand, within AZOBR_RS22530 at 65.783 kb on + strand, within AZOBR_RS22530 at 65.784 kb on - strand, within AZOBR_RS22530 at 65.910 kb on - strand, within AZOBR_RS22530 at 65.910 kb on - strand, within AZOBR_RS22530 at 66.276 kb on + strand at 66.277 kb on - strand at 66.284 kb on + strand at 66.284 kb on + strand at 66.285 kb on - strand at 66.285 kb on - strand at 66.327 kb on + strand at 66.364 kb on - strand at 66.582 kb on - strand at 66.590 kb on - strand at 66.834 kb on + strand, within AZOBR_RS22535 at 66.921 kb on + strand, within AZOBR_RS22535 at 66.958 kb on - strand, within AZOBR_RS22535 at 67.041 kb on + strand, within AZOBR_RS22535 at 67.042 kb on - strand, within AZOBR_RS22535 at 67.045 kb on + strand, within AZOBR_RS22535 at 67.146 kb on + strand, within AZOBR_RS22535 at 67.146 kb on + strand, within AZOBR_RS22535 at 67.146 kb on + strand, within AZOBR_RS22535 at 67.146 kb on + strand, within AZOBR_RS22535 at 67.147 kb on - strand, within AZOBR_RS22535 at 67.147 kb on - strand, within AZOBR_RS22535 at 67.147 kb on - strand, within AZOBR_RS22535 at 67.147 kb on - strand, within AZOBR_RS22535 at 67.147 kb on - strand, within AZOBR_RS22535 at 67.148 kb on + strand, within AZOBR_RS22535 at 67.148 kb on + strand, within AZOBR_RS22535 at 67.148 kb on + strand, within AZOBR_RS22535 at 67.149 kb on - strand, within AZOBR_RS22535 at 67.149 kb on - strand, within AZOBR_RS22535 at 67.149 kb on - strand, within AZOBR_RS22535 at 67.149 kb on - strand, within AZOBR_RS22535 at 67.149 kb on - strand, within AZOBR_RS22535 at 67.149 kb on - strand, within AZOBR_RS22535 at 67.149 kb on - strand, within AZOBR_RS22535 at 67.149 kb on - strand, within AZOBR_RS22535 at 67.264 kb on - strand, within AZOBR_RS22535
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 63,959 - +0.3 64,181 + AZOBR_RS22525 0.22 -0.3 64,182 - AZOBR_RS22525 0.23 -0.4 64,182 - AZOBR_RS22525 0.23 -1.9 64,182 - AZOBR_RS22525 0.23 +0.5 64,182 - AZOBR_RS22525 0.23 +0.1 64,182 - AZOBR_RS22525 0.23 +0.5 64,328 + AZOBR_RS22525 0.43 -0.1 64,329 - AZOBR_RS22525 0.43 -0.1 64,418 + AZOBR_RS22525 0.55 +0.8 64,545 - AZOBR_RS22525 0.73 -0.1 64,586 + AZOBR_RS22525 0.78 -0.4 64,587 - AZOBR_RS22525 0.78 -1.4 64,587 - AZOBR_RS22525 0.78 -0.3 64,608 - AZOBR_RS22525 0.81 +1.1 64,665 - AZOBR_RS22525 0.89 +0.8 64,716 - -2.6 64,716 - -2.2 64,716 - -1.1 64,789 + +0.2 64,919 + +0.2 65,037 - AZOBR_RS22530 0.16 -0.4 65,343 - AZOBR_RS22530 0.36 -0.5 65,597 + AZOBR_RS22530 0.53 +0.5 65,597 + AZOBR_RS22530 0.53 +0.3 65,708 + AZOBR_RS22530 0.61 +0.6 65,783 + AZOBR_RS22530 0.66 -1.0 65,783 + AZOBR_RS22530 0.66 -1.1 65,784 - AZOBR_RS22530 0.66 +0.5 65,910 - AZOBR_RS22530 0.75 +1.9 65,910 - AZOBR_RS22530 0.75 +0.5 66,276 + -0.4 66,277 - +1.3 66,284 + -0.7 66,284 + +0.9 66,285 - +0.8 66,285 - -3.3 66,327 + -0.4 66,364 - -3.3 66,582 - +0.8 66,590 - -2.4 66,834 + AZOBR_RS22535 0.13 +0.8 66,921 + AZOBR_RS22535 0.18 -0.9 66,958 - AZOBR_RS22535 0.20 -2.2 67,041 + AZOBR_RS22535 0.25 -0.5 67,042 - AZOBR_RS22535 0.25 -0.2 67,045 + AZOBR_RS22535 0.25 -0.4 67,146 + AZOBR_RS22535 0.31 -0.2 67,146 + AZOBR_RS22535 0.31 +0.4 67,146 + AZOBR_RS22535 0.31 +0.9 67,146 + AZOBR_RS22535 0.31 +1.4 67,147 - AZOBR_RS22535 0.31 +1.2 67,147 - AZOBR_RS22535 0.31 +0.8 67,147 - AZOBR_RS22535 0.31 +0.2 67,147 - AZOBR_RS22535 0.31 +0.6 67,147 - AZOBR_RS22535 0.31 +2.7 67,148 + AZOBR_RS22535 0.31 -0.2 67,148 + AZOBR_RS22535 0.31 -0.8 67,148 + AZOBR_RS22535 0.31 -0.3 67,149 - AZOBR_RS22535 0.31 +0.8 67,149 - AZOBR_RS22535 0.31 -2.1 67,149 - AZOBR_RS22535 0.31 +0.4 67,149 - AZOBR_RS22535 0.31 -0.8 67,149 - AZOBR_RS22535 0.31 +0.5 67,149 - AZOBR_RS22535 0.31 -0.5 67,149 - AZOBR_RS22535 0.31 +1.5 67,149 - AZOBR_RS22535 0.31 -0.1 67,264 - AZOBR_RS22535 0.37 -0.6
Or see this region's nucleotide sequence