Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS21750 and AZOBR_RS21755 are separated by 30 nucleotides AZOBR_RS21755 and AZOBR_RS21760 are separated by 136 nucleotides AZOBR_RS21760 and AZOBR_RS21765 are separated by 132 nucleotides
AZOBR_RS21750: AZOBR_RS21750 - S-adenosyl-L-methionine (SAM)-dependent methyltransferase PhcB, at 1,655,809 to 1,656,573
_RS21750
AZOBR_RS21755: AZOBR_RS21755 - acetyltransferase gnat family, at 1,656,604 to 1,657,074
_RS21755
AZOBR_RS21760: AZOBR_RS21760 - peptide ABC transporter substrate-binding protein, at 1,657,211 to 1,658,812
_RS21760
AZOBR_RS21765: AZOBR_RS21765 - peptide ABC transporter permease, at 1,658,945 to 1,659,955
_RS21765
Position (kb) 1657
1658
1659 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 1656.328 kb on + strand, within AZOBR_RS21750 at 1656.329 kb on - strand, within AZOBR_RS21750 at 1656.766 kb on + strand, within AZOBR_RS21755 at 1656.767 kb on - strand, within AZOBR_RS21755 at 1656.767 kb on - strand, within AZOBR_RS21755 at 1656.877 kb on + strand at 1656.877 kb on + strand, within AZOBR_RS21755 at 1657.019 kb on - strand, within AZOBR_RS21755 at 1657.298 kb on + strand at 1657.298 kb on + strand at 1657.299 kb on - strand at 1657.380 kb on - strand, within AZOBR_RS21760 at 1657.679 kb on + strand, within AZOBR_RS21760 at 1657.766 kb on + strand, within AZOBR_RS21760 at 1657.851 kb on - strand, within AZOBR_RS21760 at 1657.874 kb on + strand, within AZOBR_RS21760 at 1657.875 kb on - strand, within AZOBR_RS21760 at 1658.078 kb on + strand, within AZOBR_RS21760 at 1658.079 kb on - strand, within AZOBR_RS21760 at 1658.178 kb on - strand, within AZOBR_RS21760 at 1658.178 kb on - strand, within AZOBR_RS21760 at 1658.178 kb on - strand, within AZOBR_RS21760 at 1658.231 kb on + strand, within AZOBR_RS21760 at 1658.232 kb on - strand, within AZOBR_RS21760 at 1658.252 kb on + strand, within AZOBR_RS21760 at 1658.253 kb on - strand, within AZOBR_RS21760 at 1658.351 kb on + strand, within AZOBR_RS21760 at 1658.352 kb on - strand, within AZOBR_RS21760 at 1658.433 kb on - strand, within AZOBR_RS21760 at 1658.591 kb on + strand, within AZOBR_RS21760 at 1658.592 kb on - strand, within AZOBR_RS21760 at 1658.592 kb on - strand, within AZOBR_RS21760 at 1658.592 kb on - strand, within AZOBR_RS21760 at 1658.660 kb on + strand at 1658.661 kb on - strand at 1658.790 kb on - strand at 1658.810 kb on + strand at 1658.949 kb on + strand at 1658.949 kb on + strand at 1659.150 kb on - strand, within AZOBR_RS21765 at 1659.461 kb on + strand, within AZOBR_RS21765 at 1659.461 kb on + strand, within AZOBR_RS21765 at 1659.462 kb on - strand, within AZOBR_RS21765 at 1659.462 kb on - strand, within AZOBR_RS21765 at 1659.464 kb on + strand, within AZOBR_RS21765 at 1659.464 kb on + strand, within AZOBR_RS21765 at 1659.642 kb on - strand, within AZOBR_RS21765 at 1659.642 kb on - strand, within AZOBR_RS21765
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 1,656,328 + AZOBR_RS21750 0.68 -3.0 1,656,329 - AZOBR_RS21750 0.68 +1.0 1,656,766 + AZOBR_RS21755 0.34 +0.0 1,656,767 - AZOBR_RS21755 0.35 +0.3 1,656,767 - AZOBR_RS21755 0.35 -0.5 1,656,877 + +0.9 1,656,877 + AZOBR_RS21755 0.58 -3.3 1,657,019 - AZOBR_RS21755 0.88 -2.5 1,657,298 + +1.9 1,657,298 + +4.9 1,657,299 - -0.7 1,657,380 - AZOBR_RS21760 0.11 +0.6 1,657,679 + AZOBR_RS21760 0.29 -0.4 1,657,766 + AZOBR_RS21760 0.35 +0.7 1,657,851 - AZOBR_RS21760 0.40 +0.9 1,657,874 + AZOBR_RS21760 0.41 +1.0 1,657,875 - AZOBR_RS21760 0.41 +1.9 1,658,078 + AZOBR_RS21760 0.54 -0.5 1,658,079 - AZOBR_RS21760 0.54 +0.3 1,658,178 - AZOBR_RS21760 0.60 +0.5 1,658,178 - AZOBR_RS21760 0.60 -0.4 1,658,178 - AZOBR_RS21760 0.60 +0.9 1,658,231 + AZOBR_RS21760 0.64 +0.2 1,658,232 - AZOBR_RS21760 0.64 -0.9 1,658,252 + AZOBR_RS21760 0.65 -0.2 1,658,253 - AZOBR_RS21760 0.65 -0.7 1,658,351 + AZOBR_RS21760 0.71 +0.1 1,658,352 - AZOBR_RS21760 0.71 +0.7 1,658,433 - AZOBR_RS21760 0.76 -0.9 1,658,591 + AZOBR_RS21760 0.86 +1.0 1,658,592 - AZOBR_RS21760 0.86 +1.2 1,658,592 - AZOBR_RS21760 0.86 +2.3 1,658,592 - AZOBR_RS21760 0.86 +1.3 1,658,660 + +0.8 1,658,661 - +1.9 1,658,790 - -1.2 1,658,810 + +0.3 1,658,949 + +0.3 1,658,949 + -0.1 1,659,150 - AZOBR_RS21765 0.20 +0.5 1,659,461 + AZOBR_RS21765 0.51 -1.1 1,659,461 + AZOBR_RS21765 0.51 +1.4 1,659,462 - AZOBR_RS21765 0.51 -0.4 1,659,462 - AZOBR_RS21765 0.51 +0.4 1,659,464 + AZOBR_RS21765 0.51 +1.7 1,659,464 + AZOBR_RS21765 0.51 +0.0 1,659,642 - AZOBR_RS21765 0.69 +1.9 1,659,642 - AZOBR_RS21765 0.69 -0.4
Or see this region's nucleotide sequence