Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS20295 and AZOBR_RS20300 are separated by 90 nucleotides AZOBR_RS20300 and AZOBR_RS20305 are separated by 107 nucleotides AZOBR_RS20305 and AZOBR_RS20310 are separated by 169 nucleotides AZOBR_RS20310 and AZOBR_RS20315 are separated by 243 nucleotides
AZOBR_RS20295: AZOBR_RS20295 - modification methylase, at 1,323,383 to 1,324,468
_RS20295
AZOBR_RS20300: AZOBR_RS20300 - ribonuclease HII, at 1,324,559 to 1,325,173
_RS20300
AZOBR_RS20305: AZOBR_RS20305 - cAMP-binding protein, at 1,325,281 to 1,326,003
_RS20305
AZOBR_RS20310: AZOBR_RS20310 - hypothetical protein, at 1,326,173 to 1,326,670
_RS20310
AZOBR_RS20315: AZOBR_RS20315 - cold-shock protein, at 1,326,914 to 1,327,492
_RS20315
Position (kb) 1325
1326
1327 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1324.687 kb on - strand, within AZOBR_RS20300 at 1324.876 kb on - strand, within AZOBR_RS20300 at 1325.297 kb on + strand at 1325.297 kb on + strand at 1325.298 kb on - strand at 1325.298 kb on - strand at 1325.519 kb on + strand, within AZOBR_RS20305 at 1325.519 kb on + strand, within AZOBR_RS20305 at 1325.696 kb on + strand, within AZOBR_RS20305 at 1325.697 kb on - strand, within AZOBR_RS20305 at 1325.697 kb on - strand, within AZOBR_RS20305 at 1325.697 kb on - strand, within AZOBR_RS20305 at 1326.044 kb on - strand at 1326.051 kb on - strand at 1326.138 kb on - strand at 1326.296 kb on + strand, within AZOBR_RS20310 at 1326.296 kb on + strand at 1326.326 kb on + strand, within AZOBR_RS20310 at 1326.554 kb on + strand, within AZOBR_RS20310 at 1326.554 kb on + strand, within AZOBR_RS20310 at 1326.554 kb on + strand, within AZOBR_RS20310 at 1326.555 kb on - strand, within AZOBR_RS20310 at 1326.557 kb on + strand, within AZOBR_RS20310 at 1326.557 kb on + strand, within AZOBR_RS20310 at 1326.558 kb on - strand, within AZOBR_RS20310 at 1326.558 kb on - strand, within AZOBR_RS20310 at 1326.558 kb on - strand, within AZOBR_RS20310 at 1326.558 kb on - strand, within AZOBR_RS20310 at 1326.747 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 1,324,687 - AZOBR_RS20300 0.21 +0.3 1,324,876 - AZOBR_RS20300 0.52 -1.4 1,325,297 + -2.8 1,325,297 + +0.2 1,325,298 - +0.9 1,325,298 - -0.8 1,325,519 + AZOBR_RS20305 0.33 +0.1 1,325,519 + AZOBR_RS20305 0.33 -0.4 1,325,696 + AZOBR_RS20305 0.57 -2.7 1,325,697 - AZOBR_RS20305 0.58 +1.3 1,325,697 - AZOBR_RS20305 0.58 -2.5 1,325,697 - AZOBR_RS20305 0.58 +0.2 1,326,044 - +0.1 1,326,051 - -1.0 1,326,138 - +0.1 1,326,296 + AZOBR_RS20310 0.25 -0.3 1,326,296 + +1.9 1,326,326 + AZOBR_RS20310 0.31 +1.2 1,326,554 + AZOBR_RS20310 0.77 -0.0 1,326,554 + AZOBR_RS20310 0.77 +0.6 1,326,554 + AZOBR_RS20310 0.77 -0.4 1,326,555 - AZOBR_RS20310 0.77 +0.1 1,326,557 + AZOBR_RS20310 0.77 -3.9 1,326,557 + AZOBR_RS20310 0.77 -1.7 1,326,558 - AZOBR_RS20310 0.77 +2.4 1,326,558 - AZOBR_RS20310 0.77 -1.6 1,326,558 - AZOBR_RS20310 0.77 -3.0 1,326,558 - AZOBR_RS20310 0.77 -1.8 1,326,747 - -0.1
Or see this region's nucleotide sequence