Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS20280

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS20275 and AZOBR_RS20280 are separated by 38 nucleotides AZOBR_RS20275: AZOBR_RS20275 - adenine glycosylase, at 1,318,298 to 1,319,380 _RS20275 AZOBR_RS20280: AZOBR_RS20280 - hypothetical protein, at 1,319,419 to 1,320,180 _RS20280 Position (kb) 1319 1320 1321Strain fitness (log2 ratio) -2 -1 0 1 2at 1318.580 kb on + strand, within AZOBR_RS20275at 1318.584 kb on - strand, within AZOBR_RS20275at 1318.604 kb on + strand, within AZOBR_RS20275at 1318.605 kb on - strandat 1318.605 kb on - strand, within AZOBR_RS20275at 1318.694 kb on + strand, within AZOBR_RS20275at 1318.695 kb on - strand, within AZOBR_RS20275at 1318.695 kb on - strand, within AZOBR_RS20275at 1318.696 kb on + strand, within AZOBR_RS20275at 1318.696 kb on + strand, within AZOBR_RS20275at 1318.697 kb on - strand, within AZOBR_RS20275at 1319.378 kb on + strandat 1319.378 kb on + strandat 1319.979 kb on + strand, within AZOBR_RS20280at 1319.980 kb on - strand, within AZOBR_RS20280at 1320.028 kb on + strand, within AZOBR_RS20280at 1320.969 kb on + strandat 1320.970 kb on - strandat 1320.970 kb on - strandat 1320.990 kb on + strandat 1320.990 kb on + strandat 1320.991 kb on - strandat 1321.008 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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1,318,580 + AZOBR_RS20275 0.26 +0.7
1,318,584 - AZOBR_RS20275 0.26 -1.9
1,318,604 + AZOBR_RS20275 0.28 -1.3
1,318,605 - +1.9
1,318,605 - AZOBR_RS20275 0.28 -1.6
1,318,694 + AZOBR_RS20275 0.37 -0.1
1,318,695 - AZOBR_RS20275 0.37 -2.0
1,318,695 - AZOBR_RS20275 0.37 -0.4
1,318,696 + AZOBR_RS20275 0.37 +0.3
1,318,696 + AZOBR_RS20275 0.37 -1.6
1,318,697 - AZOBR_RS20275 0.37 +1.0
1,319,378 + -0.7
1,319,378 + +0.6
1,319,979 + AZOBR_RS20280 0.73 +0.5
1,319,980 - AZOBR_RS20280 0.74 -0.5
1,320,028 + AZOBR_RS20280 0.80 -0.5
1,320,969 + +1.5
1,320,970 - +0.5
1,320,970 - +0.8
1,320,990 + -1.3
1,320,990 + -2.7
1,320,991 - +0.1
1,321,008 + -0.6

Or see this region's nucleotide sequence