Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS18870 and AZOBR_RS18875 are separated by 123 nucleotides AZOBR_RS18875 and AZOBR_RS18880 are separated by 34 nucleotides AZOBR_RS18880 and AZOBR_RS18885 are separated by 161 nucleotides
AZOBR_RS18870: AZOBR_RS18870 - RNA polymerase sigma54 factor, at 1,003,949 to 1,005,526
_RS18870
AZOBR_RS18875: AZOBR_RS18875 - ribose ABC transporter permease, at 1,005,650 to 1,006,246
_RS18875
AZOBR_RS18880: AZOBR_RS18880 - nitrogen regulatory protein, at 1,006,281 to 1,006,739
_RS18880
AZOBR_RS18885: AZOBR_RS18885 - 3-demethylubiquinone-9 3-methyltransferase, at 1,006,901 to 1,007,662
_RS18885
Position (kb)
1006
1007 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1005.414 kb on + strand at 1005.524 kb on + strand at 1005.576 kb on + strand at 1005.576 kb on + strand at 1005.576 kb on + strand at 1005.577 kb on - strand at 1005.614 kb on + strand at 1005.614 kb on + strand at 1005.615 kb on - strand at 1005.615 kb on - strand at 1005.620 kb on + strand at 1005.740 kb on + strand, within AZOBR_RS18875 at 1005.740 kb on + strand, within AZOBR_RS18875 at 1006.147 kb on + strand at 1006.148 kb on - strand at 1006.148 kb on - strand, within AZOBR_RS18875 at 1006.860 kb on + strand at 1006.861 kb on - strand at 1006.861 kb on - strand at 1006.861 kb on - strand at 1006.868 kb on + strand at 1006.868 kb on + strand at 1006.868 kb on + strand at 1006.869 kb on - strand at 1006.869 kb on - strand at 1006.869 kb on - strand at 1006.869 kb on - strand at 1006.896 kb on + strand at 1006.896 kb on + strand at 1006.897 kb on - strand at 1007.677 kb on - strand at 1007.677 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 1,005,414 + -2.4 1,005,524 + +0.8 1,005,576 + -0.4 1,005,576 + -0.7 1,005,576 + +0.7 1,005,577 - +0.7 1,005,614 + -1.5 1,005,614 + +0.4 1,005,615 - +1.8 1,005,615 - +1.8 1,005,620 + +0.2 1,005,740 + AZOBR_RS18875 0.15 -1.0 1,005,740 + AZOBR_RS18875 0.15 -1.2 1,006,147 + +2.8 1,006,148 - +1.8 1,006,148 - AZOBR_RS18875 0.83 -2.0 1,006,860 + -0.3 1,006,861 - +0.7 1,006,861 - +0.1 1,006,861 - -0.1 1,006,868 + +0.6 1,006,868 + -0.5 1,006,868 + -2.1 1,006,869 - -0.0 1,006,869 - +1.7 1,006,869 - -0.1 1,006,869 - -0.2 1,006,896 + +0.5 1,006,896 + -1.2 1,006,897 - -0.6 1,007,677 - -1.8 1,007,677 - -1.2
Or see this region's nucleotide sequence