Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18880

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS18870 and AZOBR_RS18875 are separated by 123 nucleotidesAZOBR_RS18875 and AZOBR_RS18880 are separated by 34 nucleotidesAZOBR_RS18880 and AZOBR_RS18885 are separated by 161 nucleotides AZOBR_RS18870: AZOBR_RS18870 - RNA polymerase sigma54 factor, at 1,003,949 to 1,005,526 _RS18870 AZOBR_RS18875: AZOBR_RS18875 - ribose ABC transporter permease, at 1,005,650 to 1,006,246 _RS18875 AZOBR_RS18880: AZOBR_RS18880 - nitrogen regulatory protein, at 1,006,281 to 1,006,739 _RS18880 AZOBR_RS18885: AZOBR_RS18885 - 3-demethylubiquinone-9 3-methyltransferase, at 1,006,901 to 1,007,662 _RS18885 Position (kb) 1006 1007Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1005.414 kb on + strandat 1005.524 kb on + strandat 1005.576 kb on + strandat 1005.576 kb on + strandat 1005.576 kb on + strandat 1005.577 kb on - strandat 1005.614 kb on + strandat 1005.614 kb on + strandat 1005.615 kb on - strandat 1005.615 kb on - strandat 1005.620 kb on + strandat 1005.740 kb on + strand, within AZOBR_RS18875at 1005.740 kb on + strand, within AZOBR_RS18875at 1006.147 kb on + strandat 1006.148 kb on - strandat 1006.148 kb on - strand, within AZOBR_RS18875at 1006.860 kb on + strandat 1006.861 kb on - strandat 1006.861 kb on - strandat 1006.861 kb on - strandat 1006.868 kb on + strandat 1006.868 kb on + strandat 1006.868 kb on + strandat 1006.869 kb on - strandat 1006.869 kb on - strandat 1006.869 kb on - strandat 1006.869 kb on - strandat 1006.896 kb on + strandat 1006.896 kb on + strandat 1006.897 kb on - strandat 1007.677 kb on - strandat 1007.677 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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1,005,414 + -2.4
1,005,524 + +0.8
1,005,576 + -0.4
1,005,576 + -0.7
1,005,576 + +0.7
1,005,577 - +0.7
1,005,614 + -1.5
1,005,614 + +0.4
1,005,615 - +1.8
1,005,615 - +1.8
1,005,620 + +0.2
1,005,740 + AZOBR_RS18875 0.15 -1.0
1,005,740 + AZOBR_RS18875 0.15 -1.2
1,006,147 + +2.8
1,006,148 - +1.8
1,006,148 - AZOBR_RS18875 0.83 -2.0
1,006,860 + -0.3
1,006,861 - +0.7
1,006,861 - +0.1
1,006,861 - -0.1
1,006,868 + +0.6
1,006,868 + -0.5
1,006,868 + -2.1
1,006,869 - -0.0
1,006,869 - +1.7
1,006,869 - -0.1
1,006,869 - -0.2
1,006,896 + +0.5
1,006,896 + -1.2
1,006,897 - -0.6
1,007,677 - -1.8
1,007,677 - -1.2

Or see this region's nucleotide sequence