Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS16500

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS16495 and AZOBR_RS16500 are separated by 34 nucleotidesAZOBR_RS16500 and AZOBR_RS16505 are separated by 290 nucleotides AZOBR_RS16495: AZOBR_RS16495 - hypothetical protein, at 450,301 to 451,314 _RS16495 AZOBR_RS16500: AZOBR_RS16500 - C4-dicarboxylate ABC transporter permease, at 451,349 to 453,370 _RS16500 AZOBR_RS16505: AZOBR_RS16505 - hypothetical protein, at 453,661 to 454,647 _RS16505 Position (kb) 451 452 453 454Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 450.431 kb on + strand, within AZOBR_RS16495at 450.432 kb on - strand, within AZOBR_RS16495at 450.644 kb on + strand, within AZOBR_RS16495at 450.645 kb on - strand, within AZOBR_RS16495at 450.852 kb on - strandat 451.350 kb on + strandat 451.434 kb on + strandat 451.435 kb on - strandat 451.435 kb on - strandat 451.722 kb on + strand, within AZOBR_RS16500at 451.767 kb on + strand, within AZOBR_RS16500at 451.770 kb on + strand, within AZOBR_RS16500at 451.770 kb on + strand, within AZOBR_RS16500at 451.770 kb on - strand, within AZOBR_RS16500at 451.851 kb on + strand, within AZOBR_RS16500at 451.851 kb on + strand, within AZOBR_RS16500at 451.851 kb on + strand, within AZOBR_RS16500at 451.851 kb on + strand, within AZOBR_RS16500at 451.851 kb on + strand, within AZOBR_RS16500at 452.010 kb on + strand, within AZOBR_RS16500at 452.011 kb on - strand, within AZOBR_RS16500at 452.097 kb on + strand, within AZOBR_RS16500at 452.098 kb on - strand, within AZOBR_RS16500at 452.208 kb on + strand, within AZOBR_RS16500at 452.208 kb on + strand, within AZOBR_RS16500at 452.209 kb on - strand, within AZOBR_RS16500at 452.209 kb on - strand, within AZOBR_RS16500at 452.418 kb on + strand, within AZOBR_RS16500at 452.419 kb on - strand, within AZOBR_RS16500at 452.419 kb on - strand, within AZOBR_RS16500at 452.419 kb on - strand, within AZOBR_RS16500at 452.532 kb on + strand, within AZOBR_RS16500at 452.533 kb on - strand, within AZOBR_RS16500at 452.751 kb on + strand, within AZOBR_RS16500at 452.751 kb on + strand, within AZOBR_RS16500at 452.751 kb on + strand, within AZOBR_RS16500at 452.752 kb on - strand, within AZOBR_RS16500at 452.752 kb on - strand, within AZOBR_RS16500at 452.752 kb on - strand, within AZOBR_RS16500at 452.802 kb on + strand, within AZOBR_RS16500at 452.802 kb on + strand, within AZOBR_RS16500at 452.803 kb on - strand, within AZOBR_RS16500at 452.803 kb on - strand, within AZOBR_RS16500at 452.803 kb on - strand, within AZOBR_RS16500at 452.803 kb on - strand, within AZOBR_RS16500at 452.880 kb on + strand, within AZOBR_RS16500at 452.880 kb on + strand, within AZOBR_RS16500at 453.237 kb on + strandat 453.238 kb on - strandat 453.238 kb on - strandat 453.617 kb on - strandat 453.617 kb on - strandat 453.617 kb on - strandat 453.686 kb on + strandat 453.687 kb on - strandat 453.803 kb on + strand, within AZOBR_RS16505at 453.824 kb on + strand, within AZOBR_RS16505at 453.824 kb on + strand, within AZOBR_RS16505at 453.825 kb on - strand, within AZOBR_RS16505at 453.905 kb on + strand, within AZOBR_RS16505at 453.905 kb on + strand, within AZOBR_RS16505at 453.906 kb on - strand, within AZOBR_RS16505at 453.906 kb on - strand, within AZOBR_RS16505at 453.906 kb on - strand, within AZOBR_RS16505at 454.055 kb on + strand, within AZOBR_RS16505at 454.055 kb on + strand, within AZOBR_RS16505at 454.056 kb on - strand, within AZOBR_RS16505at 454.109 kb on + strand, within AZOBR_RS16505at 454.109 kb on + strand, within AZOBR_RS16505

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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450,431 + AZOBR_RS16495 0.13 +0.5
450,432 - AZOBR_RS16495 0.13 -0.4
450,644 + AZOBR_RS16495 0.34 +0.3
450,645 - AZOBR_RS16495 0.34 -0.9
450,852 - -0.8
451,350 + -1.0
451,434 + +0.9
451,435 - -2.6
451,435 - +0.1
451,722 + AZOBR_RS16500 0.18 +0.4
451,767 + AZOBR_RS16500 0.21 -0.5
451,770 + AZOBR_RS16500 0.21 -0.8
451,770 + AZOBR_RS16500 0.21 +0.7
451,770 - AZOBR_RS16500 0.21 -0.8
451,851 + AZOBR_RS16500 0.25 -0.6
451,851 + AZOBR_RS16500 0.25 -2.3
451,851 + AZOBR_RS16500 0.25 -0.1
451,851 + AZOBR_RS16500 0.25 +0.6
451,851 + AZOBR_RS16500 0.25 -2.3
452,010 + AZOBR_RS16500 0.33 +0.9
452,011 - AZOBR_RS16500 0.33 +0.0
452,097 + AZOBR_RS16500 0.37 +1.0
452,098 - AZOBR_RS16500 0.37 +0.1
452,208 + AZOBR_RS16500 0.42 -1.7
452,208 + AZOBR_RS16500 0.42 -1.1
452,209 - AZOBR_RS16500 0.43 -0.2
452,209 - AZOBR_RS16500 0.43 -0.5
452,418 + AZOBR_RS16500 0.53 -0.3
452,419 - AZOBR_RS16500 0.53 -3.4
452,419 - AZOBR_RS16500 0.53 -0.2
452,419 - AZOBR_RS16500 0.53 -0.6
452,532 + AZOBR_RS16500 0.59 -0.9
452,533 - AZOBR_RS16500 0.59 -3.0
452,751 + AZOBR_RS16500 0.69 -1.9
452,751 + AZOBR_RS16500 0.69 +0.4
452,751 + AZOBR_RS16500 0.69 -2.6
452,752 - AZOBR_RS16500 0.69 +2.4
452,752 - AZOBR_RS16500 0.69 +0.8
452,752 - AZOBR_RS16500 0.69 +0.8
452,802 + AZOBR_RS16500 0.72 +0.7
452,802 + AZOBR_RS16500 0.72 +0.6
452,803 - AZOBR_RS16500 0.72 +1.5
452,803 - AZOBR_RS16500 0.72 +0.1
452,803 - AZOBR_RS16500 0.72 +0.4
452,803 - AZOBR_RS16500 0.72 -0.7
452,880 + AZOBR_RS16500 0.76 -1.0
452,880 + AZOBR_RS16500 0.76 +1.0
453,237 + +0.4
453,238 - +0.4
453,238 - -0.5
453,617 - -0.4
453,617 - +0.2
453,617 - -2.0
453,686 + -0.6
453,687 - -0.0
453,803 + AZOBR_RS16505 0.14 -1.5
453,824 + AZOBR_RS16505 0.17 -1.5
453,824 + AZOBR_RS16505 0.17 -1.7
453,825 - AZOBR_RS16505 0.17 +0.3
453,905 + AZOBR_RS16505 0.25 -0.6
453,905 + AZOBR_RS16505 0.25 -0.6
453,906 - AZOBR_RS16505 0.25 -1.3
453,906 - AZOBR_RS16505 0.25 -1.6
453,906 - AZOBR_RS16505 0.25 +0.7
454,055 + AZOBR_RS16505 0.40 -1.0
454,055 + AZOBR_RS16505 0.40 +1.0
454,056 - AZOBR_RS16505 0.40 -2.5
454,109 + AZOBR_RS16505 0.45 -1.0
454,109 + AZOBR_RS16505 0.45 +0.9

Or see this region's nucleotide sequence