Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS14585 and AZOBR_RS14590 are separated by 202 nucleotides AZOBR_RS14590 and AZOBR_RS14595 are separated by 54 nucleotides AZOBR_RS14595 and AZOBR_RS14600 are separated by 188 nucleotides AZOBR_RS14600 and AZOBR_RS14605 are separated by 78 nucleotides
AZOBR_RS14585: AZOBR_RS14585 - hypothetical protein, at 40,896 to 41,369
_RS14585
AZOBR_RS14590: AZOBR_RS14590 - cell division protein, at 41,572 to 41,943
_RS14590
AZOBR_RS14595: AZOBR_RS14595 - hypothetical protein, at 41,998 to 43,830
_RS14595
AZOBR_RS14600: AZOBR_RS14600 - glutathione S-transferase, at 44,019 to 44,657
_RS14600
AZOBR_RS14605: AZOBR_RS14605 - ABC transporter substrate-binding protein, at 44,736 to 45,842
_RS14605
Position (kb) 41
42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 41.074 kb on + strand, within AZOBR_RS14585 at 41.173 kb on + strand, within AZOBR_RS14585 at 41.194 kb on + strand, within AZOBR_RS14585 at 41.194 kb on + strand, within AZOBR_RS14585 at 41.195 kb on - strand, within AZOBR_RS14585 at 41.389 kb on + strand at 41.429 kb on + strand at 41.523 kb on - strand at 41.530 kb on + strand at 41.531 kb on - strand at 42.104 kb on + strand at 42.104 kb on + strand at 42.105 kb on - strand at 42.105 kb on - strand at 42.105 kb on - strand at 42.147 kb on - strand at 42.147 kb on - strand at 42.396 kb on - strand, within AZOBR_RS14595 at 42.641 kb on + strand, within AZOBR_RS14595 at 42.642 kb on - strand, within AZOBR_RS14595 at 42.642 kb on - strand, within AZOBR_RS14595 at 42.749 kb on + strand, within AZOBR_RS14595 at 42.749 kb on + strand, within AZOBR_RS14595 at 42.750 kb on - strand, within AZOBR_RS14595 at 42.750 kb on - strand, within AZOBR_RS14595 at 42.767 kb on + strand, within AZOBR_RS14595 at 42.768 kb on - strand, within AZOBR_RS14595 at 42.815 kb on + strand, within AZOBR_RS14595 at 42.816 kb on - strand, within AZOBR_RS14595 at 42.998 kb on + strand, within AZOBR_RS14595 at 42.998 kb on + strand, within AZOBR_RS14595 at 43.109 kb on + strand, within AZOBR_RS14595 at 43.127 kb on + strand, within AZOBR_RS14595 at 43.166 kb on + strand, within AZOBR_RS14595 at 43.167 kb on - strand, within AZOBR_RS14595 at 43.226 kb on + strand, within AZOBR_RS14595 at 43.227 kb on - strand, within AZOBR_RS14595 at 43.227 kb on - strand, within AZOBR_RS14595 at 43.349 kb on + strand, within AZOBR_RS14595 at 43.349 kb on + strand, within AZOBR_RS14595 at 43.349 kb on + strand, within AZOBR_RS14595 at 43.557 kb on - strand, within AZOBR_RS14595 at 43.557 kb on - strand, within AZOBR_RS14595 at 43.557 kb on - strand, within AZOBR_RS14595 at 43.566 kb on + strand, within AZOBR_RS14595 at 43.700 kb on + strand at 43.716 kb on - strand at 43.716 kb on - strand at 43.884 kb on + strand at 43.884 kb on + strand at 43.885 kb on - strand at 43.901 kb on - strand at 44.069 kb on + strand at 44.070 kb on - strand at 44.070 kb on - strand at 44.175 kb on + strand, within AZOBR_RS14600 at 44.259 kb on + strand, within AZOBR_RS14600 at 44.259 kb on + strand, within AZOBR_RS14600 at 44.259 kb on + strand, within AZOBR_RS14600 at 44.260 kb on - strand, within AZOBR_RS14600 at 44.565 kb on + strand, within AZOBR_RS14600 at 44.738 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 41,074 + AZOBR_RS14585 0.38 +0.2 41,173 + AZOBR_RS14585 0.58 -1.3 41,194 + AZOBR_RS14585 0.63 +0.2 41,194 + AZOBR_RS14585 0.63 -0.7 41,195 - AZOBR_RS14585 0.63 -3.4 41,389 + -0.3 41,429 + -1.7 41,523 - +1.3 41,530 + -0.0 41,531 - +1.0 42,104 + -0.4 42,104 + +0.6 42,105 - -0.4 42,105 - +1.0 42,105 - +0.2 42,147 - -1.0 42,147 - -0.8 42,396 - AZOBR_RS14595 0.22 +0.9 42,641 + AZOBR_RS14595 0.35 -0.2 42,642 - AZOBR_RS14595 0.35 -1.2 42,642 - AZOBR_RS14595 0.35 -0.2 42,749 + AZOBR_RS14595 0.41 -1.5 42,749 + AZOBR_RS14595 0.41 -1.0 42,750 - AZOBR_RS14595 0.41 +0.1 42,750 - AZOBR_RS14595 0.41 +1.2 42,767 + AZOBR_RS14595 0.42 +1.0 42,768 - AZOBR_RS14595 0.42 -1.2 42,815 + AZOBR_RS14595 0.45 -0.8 42,816 - AZOBR_RS14595 0.45 -1.1 42,998 + AZOBR_RS14595 0.55 -0.6 42,998 + AZOBR_RS14595 0.55 +0.4 43,109 + AZOBR_RS14595 0.61 -0.4 43,127 + AZOBR_RS14595 0.62 -1.3 43,166 + AZOBR_RS14595 0.64 -0.4 43,167 - AZOBR_RS14595 0.64 -0.6 43,226 + AZOBR_RS14595 0.67 +0.2 43,227 - AZOBR_RS14595 0.67 +0.1 43,227 - AZOBR_RS14595 0.67 -1.0 43,349 + AZOBR_RS14595 0.74 -0.9 43,349 + AZOBR_RS14595 0.74 +0.4 43,349 + AZOBR_RS14595 0.74 -0.5 43,557 - AZOBR_RS14595 0.85 -0.7 43,557 - AZOBR_RS14595 0.85 +0.3 43,557 - AZOBR_RS14595 0.85 -0.7 43,566 + AZOBR_RS14595 0.86 -1.9 43,700 + -0.3 43,716 - +3.4 43,716 - -1.2 43,884 + +0.7 43,884 + +0.4 43,885 - -0.5 43,901 - +1.1 44,069 + -1.7 44,070 - -1.8 44,070 - -1.7 44,175 + AZOBR_RS14600 0.24 -0.3 44,259 + AZOBR_RS14600 0.38 -0.2 44,259 + AZOBR_RS14600 0.38 -0.1 44,259 + AZOBR_RS14600 0.38 +0.5 44,260 - AZOBR_RS14600 0.38 -0.7 44,565 + AZOBR_RS14600 0.85 -0.1 44,738 - -0.2
Or see this region's nucleotide sequence