Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS14540 and AZOBR_RS14545 are separated by 37 nucleotides AZOBR_RS14545 and AZOBR_RS14550 are separated by 90 nucleotides AZOBR_RS14550 and AZOBR_RS14555 are separated by 39 nucleotides AZOBR_RS14555 and AZOBR_RS14560 are separated by 39 nucleotides
AZOBR_RS14540: AZOBR_RS14540 - hypothetical protein, at 33,880 to 34,761
_RS14540
AZOBR_RS14545: AZOBR_RS14545 - threonine transporter, at 34,799 to 35,434
_RS14545
AZOBR_RS14550: AZOBR_RS14550 - hypothetical protein, at 35,525 to 35,845
_RS14550
AZOBR_RS14555: AZOBR_RS14555 - hypothetical protein, at 35,885 to 36,196
_RS14555
AZOBR_RS14560: AZOBR_RS14560 - hypothetical protein, at 36,236 to 36,931
_RS14560
Position (kb) 35
36 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 34.679 kb on - strand at 34.893 kb on + strand, within AZOBR_RS14545 at 34.941 kb on + strand, within AZOBR_RS14545 at 34.942 kb on - strand, within AZOBR_RS14545 at 35.184 kb on + strand, within AZOBR_RS14545 at 35.184 kb on + strand, within AZOBR_RS14545 at 35.184 kb on + strand, within AZOBR_RS14545 at 35.641 kb on - strand, within AZOBR_RS14550 at 35.739 kb on + strand, within AZOBR_RS14550 at 35.739 kb on + strand, within AZOBR_RS14550 at 35.739 kb on + strand, within AZOBR_RS14550 at 36.493 kb on - strand, within AZOBR_RS14560 at 36.493 kb on - strand, within AZOBR_RS14560 at 36.542 kb on - strand, within AZOBR_RS14560 at 36.774 kb on + strand, within AZOBR_RS14560 at 36.774 kb on + strand, within AZOBR_RS14560 at 36.774 kb on + strand, within AZOBR_RS14560
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 34,679 - -0.8 34,893 + AZOBR_RS14545 0.15 -0.2 34,941 + AZOBR_RS14545 0.22 +0.5 34,942 - AZOBR_RS14545 0.22 -3.0 35,184 + AZOBR_RS14545 0.61 -1.3 35,184 + AZOBR_RS14545 0.61 +1.4 35,184 + AZOBR_RS14545 0.61 +0.4 35,641 - AZOBR_RS14550 0.36 -0.2 35,739 + AZOBR_RS14550 0.67 -0.7 35,739 + AZOBR_RS14550 0.67 +1.2 35,739 + AZOBR_RS14550 0.67 +1.5 36,493 - AZOBR_RS14560 0.37 +0.2 36,493 - AZOBR_RS14560 0.37 +0.6 36,542 - AZOBR_RS14560 0.44 -0.0 36,774 + AZOBR_RS14560 0.77 +0.3 36,774 + AZOBR_RS14560 0.77 +0.5 36,774 + AZOBR_RS14560 0.77 -0.7
Or see this region's nucleotide sequence