Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS12020

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS12015 and AZOBR_RS12020 are separated by 20 nucleotidesAZOBR_RS12020 and AZOBR_RS12025 are separated by 23 nucleotidesAZOBR_RS12025 and AZOBR_RS12030 are separated by 126 nucleotides AZOBR_RS12015: AZOBR_RS12015 - acetyl-CoA carboxylase biotin carboxylase subunit, at 2,525,186 to 2,526,529 _RS12015 AZOBR_RS12020: AZOBR_RS12020 - acetyl-CoA carboxylase, at 2,526,550 to 2,526,999 _RS12020 AZOBR_RS12025: AZOBR_RS12025 - 3-dehydroquinate dehydratase, at 2,527,023 to 2,527,472 _RS12025 AZOBR_RS12030: AZOBR_RS12030 - amino acid ABC transporter substrate-binding protein, at 2,527,599 to 2,528,378 _RS12030 Position (kb) 2526 2527Strain fitness (log2 ratio) -1 0 1at 2527.557 kb on - strandat 2527.747 kb on + strand, within AZOBR_RS12030

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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2,527,557 - +0.3
2,527,747 + AZOBR_RS12030 0.19 -0.0

Or see this region's nucleotide sequence