Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS11355

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS11350 and AZOBR_RS11355 are separated by 231 nucleotidesAZOBR_RS11355 and AZOBR_RS11360 are separated by 91 nucleotides AZOBR_RS11350: AZOBR_RS11350 - N-formylglutamate amidohydrolase, at 2,385,570 to 2,386,397 _RS11350 AZOBR_RS11355: AZOBR_RS11355 - membrane protein, at 2,386,629 to 2,387,543 _RS11355 AZOBR_RS11360: AZOBR_RS11360 - transcriptional regulator, at 2,387,635 to 2,388,411 _RS11360 Position (kb) 2386 2387 2388Strain fitness (log2 ratio) -3 -2 -1 0 1at 2385.772 kb on + strand, within AZOBR_RS11350at 2385.773 kb on - strand, within AZOBR_RS11350at 2385.985 kb on + strand, within AZOBR_RS11350at 2385.986 kb on - strand, within AZOBR_RS11350at 2386.201 kb on + strand, within AZOBR_RS11350at 2386.202 kb on - strand, within AZOBR_RS11350at 2386.202 kb on - strand, within AZOBR_RS11350at 2386.453 kb on + strandat 2386.453 kb on + strandat 2386.601 kb on - strandat 2386.617 kb on - strandat 2386.618 kb on + strandat 2386.945 kb on - strand, within AZOBR_RS11355at 2387.169 kb on + strand, within AZOBR_RS11355at 2387.170 kb on - strand, within AZOBR_RS11355at 2387.567 kb on + strandat 2388.205 kb on + strand, within AZOBR_RS11360at 2388.205 kb on + strand, within AZOBR_RS11360at 2388.272 kb on - strand, within AZOBR_RS11360

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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2,385,772 + AZOBR_RS11350 0.24 -2.7
2,385,773 - AZOBR_RS11350 0.25 -2.4
2,385,985 + AZOBR_RS11350 0.50 +0.6
2,385,986 - AZOBR_RS11350 0.50 -2.3
2,386,201 + AZOBR_RS11350 0.76 +0.2
2,386,202 - AZOBR_RS11350 0.76 -0.3
2,386,202 - AZOBR_RS11350 0.76 -2.9
2,386,453 + -0.1
2,386,453 + -2.1
2,386,601 - -0.1
2,386,617 - +1.0
2,386,618 + -1.7
2,386,945 - AZOBR_RS11355 0.35 -0.7
2,387,169 + AZOBR_RS11355 0.59 +0.1
2,387,170 - AZOBR_RS11355 0.59 +0.4
2,387,567 + +0.1
2,388,205 + AZOBR_RS11360 0.73 +0.4
2,388,205 + AZOBR_RS11360 0.73 -2.4
2,388,272 - AZOBR_RS11360 0.82 -1.2

Or see this region's nucleotide sequence