Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS11120

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS11110 and AZOBR_RS11115 are separated by 15 nucleotidesAZOBR_RS11115 and AZOBR_RS11120 are separated by 50 nucleotidesAZOBR_RS11120 and AZOBR_RS11125 are separated by 45 nucleotidesAZOBR_RS11125 and AZOBR_RS11135 are separated by 499 nucleotides AZOBR_RS11110: AZOBR_RS11110 - flagellar biosynthesis protein, at 2,340,404 to 2,341,480 _RS11110 AZOBR_RS11115: AZOBR_RS11115 - flagellar biosynthesis protein FliR, at 2,341,496 to 2,342,266 _RS11115 AZOBR_RS11120: AZOBR_RS11120 - flagellar biosynthesis protein, at 2,342,317 to 2,342,583 _RS11120 AZOBR_RS11125: AZOBR_RS11125 - flagellar hook-basal body protein FliE, at 2,342,629 to 2,342,928 _RS11125 AZOBR_RS11135: AZOBR_RS11135 - flagellar basal-body rod protein FlgB, at 2,343,428 to 2,343,832 _RS11135 Position (kb) 2342 2343Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2341.803 kb on + strand, within AZOBR_RS11115at 2341.804 kb on - strand, within AZOBR_RS11115at 2341.804 kb on - strand, within AZOBR_RS11115at 2341.804 kb on - strand, within AZOBR_RS11115at 2341.804 kb on - strand, within AZOBR_RS11115at 2342.681 kb on - strand, within AZOBR_RS11125at 2343.040 kb on + strandat 2343.040 kb on + strandat 2343.041 kb on - strandat 2343.106 kb on + strandat 2343.106 kb on + strandat 2343.107 kb on - strandat 2343.142 kb on + strandat 2343.368 kb on + strandat 2343.368 kb on + strandat 2343.368 kb on + strandat 2343.368 kb on + strandat 2343.369 kb on - strandat 2343.477 kb on + strand, within AZOBR_RS11135at 2343.477 kb on + strand, within AZOBR_RS11135at 2343.574 kb on - strand, within AZOBR_RS11135

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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2,341,803 + AZOBR_RS11115 0.40 -1.6
2,341,804 - AZOBR_RS11115 0.40 -2.3
2,341,804 - AZOBR_RS11115 0.40 -2.1
2,341,804 - AZOBR_RS11115 0.40 -2.8
2,341,804 - AZOBR_RS11115 0.40 +1.6
2,342,681 - AZOBR_RS11125 0.17 -2.9
2,343,040 + -0.3
2,343,040 + +0.0
2,343,041 - -1.3
2,343,106 + +0.5
2,343,106 + -1.1
2,343,107 - -4.2
2,343,142 + -2.4
2,343,368 + -3.8
2,343,368 + -2.4
2,343,368 + -2.7
2,343,368 + -2.1
2,343,369 - -1.9
2,343,477 + AZOBR_RS11135 0.12 -3.8
2,343,477 + AZOBR_RS11135 0.12 -2.6
2,343,574 - AZOBR_RS11135 0.36 -1.1

Or see this region's nucleotide sequence