Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS10725

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS10720 and AZOBR_RS10725 are separated by 171 nucleotidesAZOBR_RS10725 and AZOBR_RS10730 are separated by 96 nucleotides AZOBR_RS10720: AZOBR_RS10720 - enoyl-ACP reductase, at 2,252,421 to 2,253,269 _RS10720 AZOBR_RS10725: AZOBR_RS10725 - hypothetical protein, at 2,253,441 to 2,254,604 _RS10725 AZOBR_RS10730: AZOBR_RS10730 - chorismate synthase, at 2,254,701 to 2,255,777 _RS10730 Position (kb) 2253 2254 2255Strain fitness (log2 ratio) -1 0 1at 2253.374 kb on - strandat 2253.412 kb on + strandat 2253.412 kb on + strandat 2253.413 kb on - strandat 2253.633 kb on + strand, within AZOBR_RS10725at 2253.633 kb on + strand, within AZOBR_RS10725at 2253.702 kb on + strand, within AZOBR_RS10725at 2253.702 kb on + strand, within AZOBR_RS10725at 2253.703 kb on - strand, within AZOBR_RS10725at 2253.703 kb on - strand, within AZOBR_RS10725at 2253.703 kb on - strand, within AZOBR_RS10725at 2253.703 kb on - strand, within AZOBR_RS10725at 2253.703 kb on - strand, within AZOBR_RS10725at 2253.750 kb on + strand, within AZOBR_RS10725at 2253.751 kb on - strand, within AZOBR_RS10725at 2254.167 kb on + strand, within AZOBR_RS10725at 2254.167 kb on + strand, within AZOBR_RS10725at 2254.167 kb on + strand, within AZOBR_RS10725at 2254.167 kb on + strand, within AZOBR_RS10725at 2254.167 kb on + strand, within AZOBR_RS10725at 2254.449 kb on + strand, within AZOBR_RS10725at 2254.525 kb on - strandat 2254.525 kb on - strandat 2254.602 kb on + strandat 2254.603 kb on - strandat 2254.603 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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2,253,374 - -0.5
2,253,412 + +1.0
2,253,412 + +1.2
2,253,413 - +0.7
2,253,633 + AZOBR_RS10725 0.16 -0.9
2,253,633 + AZOBR_RS10725 0.16 -0.5
2,253,702 + AZOBR_RS10725 0.22 +0.1
2,253,702 + AZOBR_RS10725 0.22 -0.7
2,253,703 - AZOBR_RS10725 0.23 +0.5
2,253,703 - AZOBR_RS10725 0.23 -0.9
2,253,703 - AZOBR_RS10725 0.23 -1.4
2,253,703 - AZOBR_RS10725 0.23 +1.5
2,253,703 - AZOBR_RS10725 0.23 -0.0
2,253,750 + AZOBR_RS10725 0.27 +0.1
2,253,751 - AZOBR_RS10725 0.27 -1.7
2,254,167 + AZOBR_RS10725 0.62 +0.5
2,254,167 + AZOBR_RS10725 0.62 +0.2
2,254,167 + AZOBR_RS10725 0.62 +1.1
2,254,167 + AZOBR_RS10725 0.62 +0.5
2,254,167 + AZOBR_RS10725 0.62 +0.1
2,254,449 + AZOBR_RS10725 0.87 +0.4
2,254,525 - +1.1
2,254,525 - -0.3
2,254,602 + +0.6
2,254,603 - -0.9
2,254,603 - +1.1

Or see this region's nucleotide sequence