Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS10615 and AZOBR_RS10620 are separated by 330 nucleotides AZOBR_RS10620 and AZOBR_RS10625 are separated by 231 nucleotides
AZOBR_RS10615: AZOBR_RS10615 - exported protein of unknown function, at 2,229,881 to 2,230,534
_RS10615
AZOBR_RS10620: AZOBR_RS10620 - membrane protein, at 2,230,865 to 2,231,029
_RS10620
AZOBR_RS10625: AZOBR_RS10625 - RNA polymerase sigma-70 factor, at 2,231,261 to 2,231,749
_RS10625
Position (kb)
2230
2231
2232 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2229.966 kb on + strand, within AZOBR_RS10615 at 2229.966 kb on + strand, within AZOBR_RS10615 at 2229.967 kb on - strand, within AZOBR_RS10615 at 2229.967 kb on - strand, within AZOBR_RS10615 at 2229.967 kb on - strand, within AZOBR_RS10615 at 2230.023 kb on + strand, within AZOBR_RS10615 at 2230.023 kb on + strand, within AZOBR_RS10615 at 2230.023 kb on + strand, within AZOBR_RS10615 at 2230.023 kb on + strand, within AZOBR_RS10615 at 2230.024 kb on - strand, within AZOBR_RS10615 at 2230.218 kb on + strand, within AZOBR_RS10615 at 2230.218 kb on + strand, within AZOBR_RS10615 at 2230.219 kb on - strand, within AZOBR_RS10615 at 2230.219 kb on - strand, within AZOBR_RS10615 at 2230.236 kb on + strand, within AZOBR_RS10615 at 2230.236 kb on + strand, within AZOBR_RS10615 at 2230.236 kb on + strand, within AZOBR_RS10615 at 2230.237 kb on - strand, within AZOBR_RS10615 at 2230.237 kb on - strand, within AZOBR_RS10615 at 2230.237 kb on - strand, within AZOBR_RS10615 at 2230.254 kb on + strand, within AZOBR_RS10615 at 2230.254 kb on + strand, within AZOBR_RS10615 at 2230.254 kb on + strand, within AZOBR_RS10615 at 2230.255 kb on - strand, within AZOBR_RS10615 at 2230.255 kb on - strand, within AZOBR_RS10615 at 2230.435 kb on - strand, within AZOBR_RS10615 at 2230.462 kb on - strand, within AZOBR_RS10615 at 2230.462 kb on - strand, within AZOBR_RS10615 at 2230.724 kb on + strand at 2231.216 kb on - strand at 2231.221 kb on + strand at 2231.379 kb on + strand, within AZOBR_RS10625 at 2231.380 kb on - strand, within AZOBR_RS10625
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 2,229,966 + AZOBR_RS10615 0.13 -0.3 2,229,966 + AZOBR_RS10615 0.13 +0.0 2,229,967 - AZOBR_RS10615 0.13 -0.2 2,229,967 - AZOBR_RS10615 0.13 +1.6 2,229,967 - AZOBR_RS10615 0.13 +0.7 2,230,023 + AZOBR_RS10615 0.22 +1.5 2,230,023 + AZOBR_RS10615 0.22 -1.0 2,230,023 + AZOBR_RS10615 0.22 +0.1 2,230,023 + AZOBR_RS10615 0.22 +1.1 2,230,024 - AZOBR_RS10615 0.22 -0.3 2,230,218 + AZOBR_RS10615 0.52 -0.8 2,230,218 + AZOBR_RS10615 0.52 -1.0 2,230,219 - AZOBR_RS10615 0.52 -0.2 2,230,219 - AZOBR_RS10615 0.52 +0.9 2,230,236 + AZOBR_RS10615 0.54 -2.0 2,230,236 + AZOBR_RS10615 0.54 -0.2 2,230,236 + AZOBR_RS10615 0.54 +0.7 2,230,237 - AZOBR_RS10615 0.54 +2.1 2,230,237 - AZOBR_RS10615 0.54 -1.2 2,230,237 - AZOBR_RS10615 0.54 -1.6 2,230,254 + AZOBR_RS10615 0.57 -1.3 2,230,254 + AZOBR_RS10615 0.57 -2.1 2,230,254 + AZOBR_RS10615 0.57 -1.4 2,230,255 - AZOBR_RS10615 0.57 -0.9 2,230,255 - AZOBR_RS10615 0.57 +0.1 2,230,435 - AZOBR_RS10615 0.85 -0.1 2,230,462 - AZOBR_RS10615 0.89 -0.3 2,230,462 - AZOBR_RS10615 0.89 -1.4 2,230,724 + -3.7 2,231,216 - -0.8 2,231,221 + +1.1 2,231,379 + AZOBR_RS10625 0.24 -0.2 2,231,380 - AZOBR_RS10625 0.24 +0.7
Or see this region's nucleotide sequence