Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS10600

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS10595 and AZOBR_RS10600 are separated by 170 nucleotidesAZOBR_RS10600 and AZOBR_RS10605 are separated by 39 nucleotidesAZOBR_RS10605 and AZOBR_RS10610 are separated by 217 nucleotides AZOBR_RS10595: AZOBR_RS10595 - membrane protein, at 2,224,043 to 2,225,401 _RS10595 AZOBR_RS10600: AZOBR_RS10600 - peptidase C69, at 2,225,572 to 2,227,005 _RS10600 AZOBR_RS10605: AZOBR_RS10605 - amino acid-binding protein, at 2,227,045 to 2,227,569 _RS10605 AZOBR_RS10610: AZOBR_RS10610 - hypothetical protein, at 2,227,787 to 2,229,862 _RS10610 Position (kb) 2225 2226 2227 2228Strain fitness (log2 ratio) -2 -1 0 1 2at 2224.723 kb on - strand, within AZOBR_RS10595at 2224.723 kb on - strand, within AZOBR_RS10595at 2224.876 kb on - strand, within AZOBR_RS10595at 2224.876 kb on - strand, within AZOBR_RS10595at 2224.876 kb on - strand, within AZOBR_RS10595at 2224.876 kb on - strand, within AZOBR_RS10595at 2225.140 kb on - strand, within AZOBR_RS10595at 2225.477 kb on + strandat 2225.478 kb on - strandat 2225.478 kb on - strandat 2225.478 kb on - strandat 2225.479 kb on + strandat 2225.479 kb on + strandat 2225.480 kb on - strandat 2225.493 kb on - strandat 2225.686 kb on + strandat 2225.686 kb on + strandat 2225.687 kb on - strandat 2225.926 kb on + strand, within AZOBR_RS10600at 2225.926 kb on + strand, within AZOBR_RS10600at 2225.926 kb on + strand, within AZOBR_RS10600at 2225.927 kb on - strand, within AZOBR_RS10600at 2226.196 kb on + strand, within AZOBR_RS10600at 2226.205 kb on + strand, within AZOBR_RS10600at 2226.205 kb on + strand, within AZOBR_RS10600at 2226.205 kb on + strand, within AZOBR_RS10600at 2226.205 kb on + strand, within AZOBR_RS10600at 2226.206 kb on - strand, within AZOBR_RS10600at 2226.206 kb on - strand, within AZOBR_RS10600at 2226.206 kb on - strand, within AZOBR_RS10600at 2226.206 kb on - strand, within AZOBR_RS10600at 2226.550 kb on + strand, within AZOBR_RS10600at 2226.673 kb on + strand, within AZOBR_RS10600at 2226.716 kb on - strand, within AZOBR_RS10600at 2226.787 kb on + strand, within AZOBR_RS10600at 2226.787 kb on + strand, within AZOBR_RS10600at 2227.457 kb on - strand, within AZOBR_RS10605at 2227.457 kb on - strand, within AZOBR_RS10605at 2227.568 kb on - strandat 2227.568 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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2,224,723 - AZOBR_RS10595 0.50 -2.0
2,224,723 - AZOBR_RS10595 0.50 +1.6
2,224,876 - AZOBR_RS10595 0.61 -0.5
2,224,876 - AZOBR_RS10595 0.61 +0.4
2,224,876 - AZOBR_RS10595 0.61 +0.1
2,224,876 - AZOBR_RS10595 0.61 +1.1
2,225,140 - AZOBR_RS10595 0.81 -2.6
2,225,477 + -0.5
2,225,478 - -0.6
2,225,478 - +0.3
2,225,478 - -0.1
2,225,479 + +0.6
2,225,479 + +0.1
2,225,480 - -1.1
2,225,493 - +1.7
2,225,686 + +0.1
2,225,686 + -1.5
2,225,687 - -1.9
2,225,926 + AZOBR_RS10600 0.25 -1.0
2,225,926 + AZOBR_RS10600 0.25 -0.3
2,225,926 + AZOBR_RS10600 0.25 +2.2
2,225,927 - AZOBR_RS10600 0.25 +0.7
2,226,196 + AZOBR_RS10600 0.44 -1.2
2,226,205 + AZOBR_RS10600 0.44 -0.5
2,226,205 + AZOBR_RS10600 0.44 -0.1
2,226,205 + AZOBR_RS10600 0.44 -0.7
2,226,205 + AZOBR_RS10600 0.44 +0.8
2,226,206 - AZOBR_RS10600 0.44 +0.5
2,226,206 - AZOBR_RS10600 0.44 +0.1
2,226,206 - AZOBR_RS10600 0.44 -0.0
2,226,206 - AZOBR_RS10600 0.44 +0.4
2,226,550 + AZOBR_RS10600 0.68 +0.0
2,226,673 + AZOBR_RS10600 0.77 +0.7
2,226,716 - AZOBR_RS10600 0.80 +0.5
2,226,787 + AZOBR_RS10600 0.85 -0.1
2,226,787 + AZOBR_RS10600 0.85 +0.5
2,227,457 - AZOBR_RS10605 0.78 -0.9
2,227,457 - AZOBR_RS10605 0.78 -0.5
2,227,568 - -0.4
2,227,568 - -0.3

Or see this region's nucleotide sequence