Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09500

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09495 and AZOBR_RS09500 are separated by 398 nucleotidesAZOBR_RS09500 and AZOBR_RS09505 are separated by 98 nucleotides AZOBR_RS09495: AZOBR_RS09495 - hypothetical protein, at 1,987,849 to 1,988,295 _RS09495 AZOBR_RS09500: AZOBR_RS09500 - hypothetical protein, at 1,988,694 to 1,989,377 _RS09500 AZOBR_RS09505: AZOBR_RS09505 - DNA polymerase III epsilon subunit, at 1,989,476 to 1,990,789 _RS09505 Position (kb) 1988 1989 1990Strain fitness (log2 ratio) -2 -1 0 1 2at 1987.748 kb on + strandat 1987.749 kb on - strandat 1987.749 kb on - strandat 1987.797 kb on - strandat 1987.850 kb on + strandat 1987.851 kb on - strandat 1988.177 kb on + strand, within AZOBR_RS09495at 1988.283 kb on - strandat 1988.377 kb on + strandat 1988.925 kb on + strand, within AZOBR_RS09500at 1988.925 kb on + strand, within AZOBR_RS09500at 1988.926 kb on - strand, within AZOBR_RS09500at 1988.926 kb on - strand, within AZOBR_RS09500at 1988.926 kb on - strand, within AZOBR_RS09500at 1989.375 kb on + strandat 1989.438 kb on - strandat 1989.454 kb on + strandat 1989.947 kb on + strand, within AZOBR_RS09505at 1989.947 kb on + strand, within AZOBR_RS09505at 1989.948 kb on - strand, within AZOBR_RS09505at 1989.948 kb on - strand, within AZOBR_RS09505

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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1,987,748 + +0.2
1,987,749 - +1.0
1,987,749 - +0.0
1,987,797 - +1.0
1,987,850 + +0.0
1,987,851 - +0.4
1,988,177 + AZOBR_RS09495 0.73 +1.2
1,988,283 - +2.7
1,988,377 + +2.0
1,988,925 + AZOBR_RS09500 0.34 +0.4
1,988,925 + AZOBR_RS09500 0.34 -0.2
1,988,926 - AZOBR_RS09500 0.34 -1.4
1,988,926 - AZOBR_RS09500 0.34 +1.0
1,988,926 - AZOBR_RS09500 0.34 -2.7
1,989,375 + +0.4
1,989,438 - -0.1
1,989,454 + -2.0
1,989,947 + AZOBR_RS09505 0.36 -1.4
1,989,947 + AZOBR_RS09505 0.36 -1.5
1,989,948 - AZOBR_RS09505 0.36 -0.4
1,989,948 - AZOBR_RS09505 0.36 -1.2

Or see this region's nucleotide sequence