Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS09020 and AZOBR_RS00030 are separated by 13 nucleotides AZOBR_RS00030 and AZOBR_RS09025 are separated by 39 nucleotides AZOBR_RS09025 and AZOBR_RS09030 are separated by 12 nucleotides AZOBR_RS09030 and AZOBR_RS09035 are separated by 200 nucleotides
AZOBR_RS09020: AZOBR_RS09020 - hypothetical protein, at 1,886,482 to 1,886,796
_RS09020
AZOBR_RS00030: AZOBR_RS00030 - 6S, at 1,886,810 to 1,886,969
_RS00030
AZOBR_RS09025: AZOBR_RS09025 - 5-formyltetrahydrofolate cyclo-ligase, at 1,887,009 to 1,887,617
_RS09025
AZOBR_RS09030: AZOBR_RS09030 - metallophosphoesterase, at 1,887,630 to 1,888,451
_RS09030
AZOBR_RS09035: AZOBR_RS09035 - transcriptional regulator, at 1,888,652 to 1,889,404
_RS09035
Position (kb) 1887
1888
1889 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1886.800 kb on - strand at 1886.800 kb on - strand at 1886.862 kb on - strand, within AZOBR_RS00030 at 1887.242 kb on + strand at 1887.242 kb on + strand, within AZOBR_RS09025 at 1887.346 kb on - strand, within AZOBR_RS09025 at 1887.456 kb on + strand, within AZOBR_RS09025 at 1887.459 kb on + strand, within AZOBR_RS09025 at 1887.460 kb on - strand, within AZOBR_RS09025 at 1887.900 kb on + strand, within AZOBR_RS09030 at 1888.357 kb on - strand, within AZOBR_RS09030 at 1888.519 kb on + strand at 1888.519 kb on + strand at 1888.519 kb on + strand at 1888.527 kb on + strand at 1888.576 kb on + strand at 1888.576 kb on + strand at 1889.012 kb on + strand, within AZOBR_RS09035 at 1889.075 kb on + strand, within AZOBR_RS09035
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 1,886,800 - -0.5 1,886,800 - -3.1 1,886,862 - AZOBR_RS00030 0.33 -1.3 1,887,242 + -0.8 1,887,242 + AZOBR_RS09025 0.38 -1.6 1,887,346 - AZOBR_RS09025 0.55 -1.0 1,887,456 + AZOBR_RS09025 0.73 -1.0 1,887,459 + AZOBR_RS09025 0.74 -3.2 1,887,460 - AZOBR_RS09025 0.74 -1.9 1,887,900 + AZOBR_RS09030 0.33 -1.0 1,888,357 - AZOBR_RS09030 0.88 -0.4 1,888,519 + +0.9 1,888,519 + +1.8 1,888,519 + +0.6 1,888,527 + +1.0 1,888,576 + +0.2 1,888,576 + -1.7 1,889,012 + AZOBR_RS09035 0.48 +1.9 1,889,075 + AZOBR_RS09035 0.56 +1.0
Or see this region's nucleotide sequence