Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS06285

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS06280 and AZOBR_RS06285 overlap by 54 nucleotidesAZOBR_RS06285 and AZOBR_RS06295 are separated by 614 nucleotides AZOBR_RS06280: AZOBR_RS06280 - membrane protein of unknown function, at 1,330,228 to 1,331,316 _RS06280 AZOBR_RS06285: AZOBR_RS06285 - epoxyqueuosine reductase, at 1,331,263 to 1,332,279 _RS06285 AZOBR_RS06295: AZOBR_RS06295 - queuine tRNA-ribosyltransferase, at 1,332,894 to 1,334,096 _RS06295 Position (kb) 1331 1332 1333Strain fitness (log2 ratio) -1 0 1at 1330.609 kb on + strand, within AZOBR_RS06280at 1331.105 kb on + strand, within AZOBR_RS06280at 1331.559 kb on - strand, within AZOBR_RS06285at 1331.559 kb on - strand, within AZOBR_RS06285at 1331.559 kb on - strand, within AZOBR_RS06285at 1331.624 kb on + strand, within AZOBR_RS06285at 1331.756 kb on + strand, within AZOBR_RS06285at 1331.957 kb on + strand, within AZOBR_RS06285at 1332.038 kb on + strand, within AZOBR_RS06285at 1332.549 kb on - strandat 1332.708 kb on + strandat 1332.708 kb on + strandat 1332.885 kb on + strandat 1332.885 kb on + strandat 1332.886 kb on - strandat 1332.886 kb on - strandat 1332.889 kb on + strandat 1332.890 kb on - strandat 1332.890 kb on - strandat 1333.079 kb on - strand, within AZOBR_RS06295at 1333.082 kb on - strand, within AZOBR_RS06295at 1333.082 kb on - strand, within AZOBR_RS06295

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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1,330,609 + AZOBR_RS06280 0.35 -0.9
1,331,105 + AZOBR_RS06280 0.81 -1.0
1,331,559 - AZOBR_RS06285 0.29 -0.2
1,331,559 - AZOBR_RS06285 0.29 +0.3
1,331,559 - AZOBR_RS06285 0.29 -0.1
1,331,624 + AZOBR_RS06285 0.35 -0.3
1,331,756 + AZOBR_RS06285 0.48 +0.1
1,331,957 + AZOBR_RS06285 0.68 +1.4
1,332,038 + AZOBR_RS06285 0.76 +0.2
1,332,549 - -1.4
1,332,708 + +0.5
1,332,708 + -1.0
1,332,885 + +0.5
1,332,885 + -1.1
1,332,886 - -0.3
1,332,886 - +0.4
1,332,889 + +0.5
1,332,890 - -1.2
1,332,890 - -0.4
1,333,079 - AZOBR_RS06295 0.15 +0.8
1,333,082 - AZOBR_RS06295 0.16 +0.1
1,333,082 - AZOBR_RS06295 0.16 +1.5

Or see this region's nucleotide sequence