Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS03390

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS03385 and AZOBR_RS03390 are separated by 150 nucleotidesAZOBR_RS03390 and AZOBR_RS03395 are separated by 260 nucleotides AZOBR_RS03385: AZOBR_RS03385 - polysaccharide biosynthesis protein, at 717,831 to 719,276 _RS03385 AZOBR_RS03390: AZOBR_RS03390 - protein tyrosine kinase, at 719,427 to 721,700 _RS03390 AZOBR_RS03395: AZOBR_RS03395 - Crp/Fnr family transcriptional regulator, at 721,961 to 722,629 _RS03395 Position (kb) 719 720 721 722Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 718.876 kb on + strand, within AZOBR_RS03385at 718.982 kb on - strand, within AZOBR_RS03385at 718.982 kb on - strand, within AZOBR_RS03385at 719.083 kb on + strand, within AZOBR_RS03385at 719.438 kb on - strandat 719.438 kb on - strandat 719.441 kb on - strandat 719.692 kb on + strand, within AZOBR_RS03390at 719.693 kb on - strand, within AZOBR_RS03390at 720.109 kb on + strand, within AZOBR_RS03390at 720.109 kb on + strand, within AZOBR_RS03390at 720.110 kb on - strand, within AZOBR_RS03390at 720.409 kb on + strand, within AZOBR_RS03390at 720.409 kb on + strand, within AZOBR_RS03390at 720.409 kb on + strand, within AZOBR_RS03390at 720.409 kb on + strand, within AZOBR_RS03390at 720.409 kb on + strand, within AZOBR_RS03390at 720.409 kb on + strand, within AZOBR_RS03390at 720.409 kb on + strand, within AZOBR_RS03390at 720.409 kb on + strand, within AZOBR_RS03390at 720.410 kb on - strand, within AZOBR_RS03390at 720.410 kb on - strand, within AZOBR_RS03390at 720.410 kb on - strand, within AZOBR_RS03390at 720.410 kb on - strand, within AZOBR_RS03390at 720.652 kb on + strand, within AZOBR_RS03390at 720.652 kb on + strand, within AZOBR_RS03390at 720.653 kb on - strand, within AZOBR_RS03390at 720.832 kb on + strand, within AZOBR_RS03390at 720.832 kb on + strand, within AZOBR_RS03390at 720.832 kb on + strand, within AZOBR_RS03390at 720.832 kb on + strand, within AZOBR_RS03390at 720.914 kb on - strand, within AZOBR_RS03390at 721.033 kb on + strand, within AZOBR_RS03390at 721.033 kb on + strand, within AZOBR_RS03390at 721.033 kb on + strand, within AZOBR_RS03390at 721.034 kb on - strand, within AZOBR_RS03390at 721.034 kb on - strand, within AZOBR_RS03390at 721.108 kb on + strand, within AZOBR_RS03390at 721.108 kb on + strand, within AZOBR_RS03390at 721.273 kb on + strand, within AZOBR_RS03390at 721.273 kb on + strand, within AZOBR_RS03390at 721.273 kb on + strand, within AZOBR_RS03390at 721.274 kb on - strand, within AZOBR_RS03390at 721.274 kb on - strand, within AZOBR_RS03390at 721.438 kb on + strand, within AZOBR_RS03390at 721.439 kb on - strand, within AZOBR_RS03390at 721.492 kb on + strandat 721.568 kb on + strandat 721.745 kb on + strandat 721.745 kb on + strandat 721.754 kb on + strandat 721.755 kb on - strandat 721.755 kb on - strandat 721.755 kb on - strandat 721.755 kb on - strandat 721.800 kb on + strandat 721.800 kb on + strandat 721.801 kb on - strandat 721.801 kb on - strandat 721.801 kb on - strandat 721.801 kb on - strandat 722.234 kb on + strand, within AZOBR_RS03395at 722.695 kb on + strandat 722.696 kb on - strandat 722.696 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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718,876 + AZOBR_RS03385 0.72 -0.4
718,982 - AZOBR_RS03385 0.80 +0.1
718,982 - AZOBR_RS03385 0.80 +0.5
719,083 + AZOBR_RS03385 0.87 -1.1
719,438 - -1.0
719,438 - +0.2
719,441 - -0.2
719,692 + AZOBR_RS03390 0.12 +0.6
719,693 - AZOBR_RS03390 0.12 -0.6
720,109 + AZOBR_RS03390 0.30 -0.2
720,109 + AZOBR_RS03390 0.30 -0.4
720,110 - AZOBR_RS03390 0.30 +0.6
720,409 + AZOBR_RS03390 0.43 +0.9
720,409 + AZOBR_RS03390 0.43 +0.7
720,409 + AZOBR_RS03390 0.43 -0.7
720,409 + AZOBR_RS03390 0.43 +0.1
720,409 + AZOBR_RS03390 0.43 -0.5
720,409 + AZOBR_RS03390 0.43 -3.2
720,409 + AZOBR_RS03390 0.43 +0.7
720,409 + AZOBR_RS03390 0.43 +0.8
720,410 - AZOBR_RS03390 0.43 +0.2
720,410 - AZOBR_RS03390 0.43 +0.5
720,410 - AZOBR_RS03390 0.43 -0.1
720,410 - AZOBR_RS03390 0.43 +0.9
720,652 + AZOBR_RS03390 0.54 -1.4
720,652 + AZOBR_RS03390 0.54 +1.2
720,653 - AZOBR_RS03390 0.54 +1.5
720,832 + AZOBR_RS03390 0.62 -2.1
720,832 + AZOBR_RS03390 0.62 -0.3
720,832 + AZOBR_RS03390 0.62 +0.3
720,832 + AZOBR_RS03390 0.62 +1.4
720,914 - AZOBR_RS03390 0.65 +0.0
721,033 + AZOBR_RS03390 0.71 -0.9
721,033 + AZOBR_RS03390 0.71 -3.8
721,033 + AZOBR_RS03390 0.71 +0.3
721,034 - AZOBR_RS03390 0.71 +0.8
721,034 - AZOBR_RS03390 0.71 +0.9
721,108 + AZOBR_RS03390 0.74 -0.4
721,108 + AZOBR_RS03390 0.74 +0.9
721,273 + AZOBR_RS03390 0.81 +0.3
721,273 + AZOBR_RS03390 0.81 -2.7
721,273 + AZOBR_RS03390 0.81 +0.9
721,274 - AZOBR_RS03390 0.81 -2.5
721,274 - AZOBR_RS03390 0.81 -1.2
721,438 + AZOBR_RS03390 0.88 -1.1
721,439 - AZOBR_RS03390 0.88 +0.3
721,492 + -1.1
721,568 + -0.0
721,745 + -0.4
721,745 + +0.3
721,754 + -0.2
721,755 - +0.0
721,755 - +0.0
721,755 - +0.3
721,755 - +1.3
721,800 + +1.3
721,800 + +0.4
721,801 - +0.1
721,801 - -0.7
721,801 - +0.0
721,801 - -0.2
722,234 + AZOBR_RS03395 0.41 -0.7
722,695 + -0.2
722,696 - -2.7
722,696 - -0.1

Or see this region's nucleotide sequence