Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03375 and AZOBR_RS03380 are separated by 53 nucleotides AZOBR_RS03380 and AZOBR_RS03385 are separated by 230 nucleotides
AZOBR_RS03375: AZOBR_RS03375 - NAD-dependent dehydratase, at 715,190 to 716,191
_RS03375
AZOBR_RS03380: AZOBR_RS03380 - UDP-glucose 6-dehydrogenase, at 716,245 to 717,600
_RS03380
AZOBR_RS03385: AZOBR_RS03385 - polysaccharide biosynthesis protein, at 717,831 to 719,276
_RS03385
Position (kb) 716
717
718 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 715.452 kb on + strand, within AZOBR_RS03375 at 715.452 kb on + strand, within AZOBR_RS03375 at 715.452 kb on + strand, within AZOBR_RS03375 at 715.452 kb on + strand, within AZOBR_RS03375 at 715.452 kb on + strand, within AZOBR_RS03375 at 715.452 kb on + strand, within AZOBR_RS03375 at 715.452 kb on + strand, within AZOBR_RS03375 at 715.453 kb on - strand, within AZOBR_RS03375 at 715.453 kb on - strand, within AZOBR_RS03375 at 715.453 kb on - strand, within AZOBR_RS03375 at 715.453 kb on - strand, within AZOBR_RS03375 at 715.651 kb on - strand, within AZOBR_RS03375 at 715.743 kb on + strand, within AZOBR_RS03375 at 715.750 kb on - strand, within AZOBR_RS03375 at 715.822 kb on - strand, within AZOBR_RS03375 at 715.936 kb on - strand, within AZOBR_RS03375 at 715.936 kb on - strand, within AZOBR_RS03375 at 715.936 kb on - strand, within AZOBR_RS03375 at 716.179 kb on - strand at 716.351 kb on + strand at 716.351 kb on + strand at 716.351 kb on + strand at 716.352 kb on - strand at 716.352 kb on - strand at 716.352 kb on - strand at 716.352 kb on - strand at 716.957 kb on + strand, within AZOBR_RS03380 at 716.957 kb on + strand, within AZOBR_RS03380 at 716.958 kb on - strand, within AZOBR_RS03380 at 716.958 kb on - strand, within AZOBR_RS03380 at 716.958 kb on - strand, within AZOBR_RS03380 at 717.549 kb on - strand at 717.549 kb on - strand at 717.600 kb on + strand at 717.600 kb on + strand at 717.600 kb on + strand at 717.601 kb on - strand at 717.601 kb on - strand at 717.618 kb on + strand at 717.618 kb on + strand at 717.619 kb on - strand at 717.905 kb on - strand at 718.051 kb on + strand, within AZOBR_RS03385 at 718.051 kb on + strand, within AZOBR_RS03385 at 718.052 kb on - strand, within AZOBR_RS03385 at 718.213 kb on + strand, within AZOBR_RS03385 at 718.213 kb on + strand, within AZOBR_RS03385 at 718.213 kb on + strand, within AZOBR_RS03385 at 718.213 kb on + strand, within AZOBR_RS03385 at 718.214 kb on - strand, within AZOBR_RS03385 at 718.214 kb on - strand, within AZOBR_RS03385 at 718.214 kb on - strand, within AZOBR_RS03385 at 718.415 kb on - strand, within AZOBR_RS03385
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 715,452 + AZOBR_RS03375 0.26 -1.5 715,452 + AZOBR_RS03375 0.26 -0.8 715,452 + AZOBR_RS03375 0.26 -0.3 715,452 + AZOBR_RS03375 0.26 -1.1 715,452 + AZOBR_RS03375 0.26 -2.8 715,452 + AZOBR_RS03375 0.26 -1.1 715,452 + AZOBR_RS03375 0.26 +0.6 715,453 - AZOBR_RS03375 0.26 -2.8 715,453 - AZOBR_RS03375 0.26 +0.8 715,453 - AZOBR_RS03375 0.26 -3.1 715,453 - AZOBR_RS03375 0.26 -2.1 715,651 - AZOBR_RS03375 0.46 -0.1 715,743 + AZOBR_RS03375 0.55 +0.7 715,750 - AZOBR_RS03375 0.56 -0.2 715,822 - AZOBR_RS03375 0.63 +0.9 715,936 - AZOBR_RS03375 0.74 -1.9 715,936 - AZOBR_RS03375 0.74 -0.1 715,936 - AZOBR_RS03375 0.74 -3.2 716,179 - -1.0 716,351 + +0.6 716,351 + -0.4 716,351 + +1.2 716,352 - +1.0 716,352 - -0.1 716,352 - -0.8 716,352 - -0.6 716,957 + AZOBR_RS03380 0.53 -0.3 716,957 + AZOBR_RS03380 0.53 -0.8 716,958 - AZOBR_RS03380 0.53 -2.0 716,958 - AZOBR_RS03380 0.53 -0.2 716,958 - AZOBR_RS03380 0.53 +0.9 717,549 - +0.4 717,549 - -0.2 717,600 + +0.9 717,600 + -1.7 717,600 + -1.9 717,601 - -0.8 717,601 - -2.3 717,618 + +0.4 717,618 + +0.3 717,619 - +1.2 717,905 - +0.2 718,051 + AZOBR_RS03385 0.15 -1.6 718,051 + AZOBR_RS03385 0.15 -1.6 718,052 - AZOBR_RS03385 0.15 -1.1 718,213 + AZOBR_RS03385 0.26 +0.5 718,213 + AZOBR_RS03385 0.26 +0.9 718,213 + AZOBR_RS03385 0.26 +0.3 718,213 + AZOBR_RS03385 0.26 +0.9 718,214 - AZOBR_RS03385 0.26 +0.3 718,214 - AZOBR_RS03385 0.26 +0.2 718,214 - AZOBR_RS03385 0.26 -0.2 718,415 - AZOBR_RS03385 0.40 +0.6
Or see this region's nucleotide sequence