Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS02345

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS02335 and AZOBR_RS02340 are separated by 174 nucleotidesAZOBR_RS02340 and AZOBR_RS02345 are separated by 170 nucleotidesAZOBR_RS02345 and AZOBR_RS02350 are separated by 77 nucleotides AZOBR_RS02335: AZOBR_RS02335 - peptide ABC transporter permease, at 482,547 to 483,407 _RS02335 AZOBR_RS02340: AZOBR_RS02340 - xanthine phosphoribosyltransferase, at 483,582 to 484,082 _RS02340 AZOBR_RS02345: AZOBR_RS02345 - tRNA-Arg, at 484,253 to 484,329 _RS02345 AZOBR_RS02350: AZOBR_RS02350 - hypothetical protein, at 484,407 to 484,586 _RS02350 Position (kb) 484 485Strain fitness (log2 ratio) -2 -1 0 1at 483.715 kb on + strand, within AZOBR_RS02340at 483.877 kb on + strand, within AZOBR_RS02340at 483.877 kb on + strand, within AZOBR_RS02340at 484.116 kb on - strandat 484.117 kb on + strandat 484.118 kb on - strandat 484.727 kb on + strandat 484.728 kb on - strandat 485.060 kb on - strandat 485.060 kb on - strandat 485.264 kb on + strandat 485.264 kb on + strandat 485.264 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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483,715 + AZOBR_RS02340 0.27 -0.5
483,877 + AZOBR_RS02340 0.59 -2.3
483,877 + AZOBR_RS02340 0.59 -0.7
484,116 - -0.8
484,117 + -1.1
484,118 - +0.6
484,727 + -0.5
484,728 - +1.4
485,060 - -0.5
485,060 - -0.3
485,264 + +0.5
485,264 + -0.1
485,264 + -0.1

Or see this region's nucleotide sequence