Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS00690

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS00685 and AZOBR_RS00690 are separated by 121 nucleotidesAZOBR_RS00690 and AZOBR_RS00695 are separated by 152 nucleotides AZOBR_RS00685: AZOBR_RS00685 - amino acid ABC transporter substrate-binding protein, at 135,240 to 136,076 _RS00685 AZOBR_RS00690: AZOBR_RS00690 - ATP-binding protein, at 136,198 to 137,004 _RS00690 AZOBR_RS00695: AZOBR_RS00695 - transporter, at 137,157 to 138,806 _RS00695 Position (kb) 136 137 138Strain fitness (log2 ratio) -3 -2 -1 0 1at 135.210 kb on - strandat 135.226 kb on - strandat 135.226 kb on - strandat 135.532 kb on + strand, within AZOBR_RS00685at 135.533 kb on - strand, within AZOBR_RS00685at 135.533 kb on - strand, within AZOBR_RS00685at 135.673 kb on + strand, within AZOBR_RS00685at 135.673 kb on + strand, within AZOBR_RS00685at 135.673 kb on + strand, within AZOBR_RS00685at 135.817 kb on + strand, within AZOBR_RS00685at 135.817 kb on + strand, within AZOBR_RS00685at 135.967 kb on + strand, within AZOBR_RS00685at 136.119 kb on - strandat 136.119 kb on - strandat 136.535 kb on + strand, within AZOBR_RS00690at 137.077 kb on + strandat 137.078 kb on - strandat 137.219 kb on - strandat 137.230 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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135,210 - -0.4
135,226 - -1.4
135,226 - -0.3
135,532 + AZOBR_RS00685 0.35 -0.5
135,533 - AZOBR_RS00685 0.35 -3.5
135,533 - AZOBR_RS00685 0.35 -1.9
135,673 + AZOBR_RS00685 0.52 +0.3
135,673 + AZOBR_RS00685 0.52 -3.3
135,673 + AZOBR_RS00685 0.52 -0.9
135,817 + AZOBR_RS00685 0.69 +0.5
135,817 + AZOBR_RS00685 0.69 +0.5
135,967 + AZOBR_RS00685 0.87 -2.5
136,119 - -2.3
136,119 - -2.4
136,535 + AZOBR_RS00690 0.42 -1.1
137,077 + -0.4
137,078 - -1.4
137,219 - -0.1
137,230 + -0.2

Or see this region's nucleotide sequence