Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS00070

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS00060 and AZOBR_RS00065 are separated by 3 nucleotidesAZOBR_RS00065 and AZOBR_RS00070 are separated by 38 nucleotidesAZOBR_RS00070 and AZOBR_RS00075 are separated by 139 nucleotides AZOBR_RS00060: AZOBR_RS00060 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein, at 855 to 1,928 _RS00060 AZOBR_RS00065: AZOBR_RS00065 - glycerol-3-phosphate transporter membrane protein, at 1,932 to 2,762 _RS00065 AZOBR_RS00070: AZOBR_RS00070 - glycerol-3-phosphate transporter permease, at 2,801 to 3,685 _RS00070 AZOBR_RS00075: AZOBR_RS00075 - glycerol-3-phosphate ABC transporter substrate-binding protein, at 3,825 to 5,162 _RS00075 Position (kb) 2 3 4Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1.934 kb on - strandat 2.134 kb on + strand, within AZOBR_RS00065at 2.134 kb on + strand, within AZOBR_RS00065at 2.135 kb on - strand, within AZOBR_RS00065at 2.135 kb on - strand, within AZOBR_RS00065at 2.150 kb on - strand, within AZOBR_RS00065at 2.344 kb on + strand, within AZOBR_RS00065at 2.344 kb on + strand, within AZOBR_RS00065at 2.344 kb on + strand, within AZOBR_RS00065at 2.345 kb on - strand, within AZOBR_RS00065at 2.380 kb on + strand, within AZOBR_RS00065at 2.380 kb on + strand, within AZOBR_RS00065at 2.381 kb on - strand, within AZOBR_RS00065at 2.479 kb on + strand, within AZOBR_RS00065at 2.611 kb on + strand, within AZOBR_RS00065at 2.612 kb on - strand, within AZOBR_RS00065at 2.612 kb on - strand, within AZOBR_RS00065at 2.612 kb on - strand, within AZOBR_RS00065at 2.612 kb on - strand, within AZOBR_RS00065at 2.612 kb on - strand, within AZOBR_RS00065at 2.754 kb on + strandat 2.754 kb on + strandat 2.754 kb on + strandat 2.754 kb on + strandat 2.754 kb on + strandat 2.754 kb on + strandat 2.755 kb on - strandat 2.755 kb on - strandat 2.808 kb on + strandat 2.808 kb on + strandat 2.808 kb on + strandat 2.808 kb on + strandat 2.808 kb on + strandat 2.808 kb on + strandat 2.809 kb on - strandat 2.809 kb on - strandat 2.809 kb on - strandat 2.809 kb on - strandat 2.809 kb on - strandat 2.809 kb on - strandat 2.929 kb on - strand, within AZOBR_RS00070at 3.015 kb on + strand, within AZOBR_RS00070at 3.174 kb on + strand, within AZOBR_RS00070at 3.174 kb on + strand, within AZOBR_RS00070at 3.175 kb on - strand, within AZOBR_RS00070at 3.175 kb on - strand, within AZOBR_RS00070at 3.175 kb on - strand, within AZOBR_RS00070at 3.369 kb on + strand, within AZOBR_RS00070at 3.369 kb on + strand, within AZOBR_RS00070at 3.487 kb on - strand, within AZOBR_RS00070at 3.487 kb on - strand, within AZOBR_RS00070at 3.487 kb on - strand, within AZOBR_RS00070at 3.645 kb on + strandat 3.646 kb on - strandat 3.820 kb on + strandat 4.054 kb on + strand, within AZOBR_RS00075at 4.054 kb on + strand, within AZOBR_RS00075at 4.055 kb on - strand, within AZOBR_RS00075at 4.055 kb on - strand, within AZOBR_RS00075at 4.153 kb on + strand, within AZOBR_RS00075at 4.180 kb on + strand, within AZOBR_RS00075at 4.180 kb on + strand, within AZOBR_RS00075at 4.180 kb on + strand, within AZOBR_RS00075at 4.180 kb on + strandat 4.180 kb on + strand, within AZOBR_RS00075at 4.181 kb on - strand, within AZOBR_RS00075at 4.181 kb on - strand, within AZOBR_RS00075

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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1,934 - +0.4
2,134 + AZOBR_RS00065 0.24 +0.8
2,134 + AZOBR_RS00065 0.24 -4.9
2,135 - AZOBR_RS00065 0.24 -3.2
2,135 - AZOBR_RS00065 0.24 +0.5
2,150 - AZOBR_RS00065 0.26 -0.2
2,344 + AZOBR_RS00065 0.50 -0.5
2,344 + AZOBR_RS00065 0.50 +0.6
2,344 + AZOBR_RS00065 0.50 -1.1
2,345 - AZOBR_RS00065 0.50 -0.7
2,380 + AZOBR_RS00065 0.54 -2.0
2,380 + AZOBR_RS00065 0.54 -0.9
2,381 - AZOBR_RS00065 0.54 -3.4
2,479 + AZOBR_RS00065 0.66 -0.1
2,611 + AZOBR_RS00065 0.82 -1.2
2,612 - AZOBR_RS00065 0.82 +0.5
2,612 - AZOBR_RS00065 0.82 -0.4
2,612 - AZOBR_RS00065 0.82 -0.7
2,612 - AZOBR_RS00065 0.82 +0.1
2,612 - AZOBR_RS00065 0.82 -1.0
2,754 + +0.5
2,754 + +0.0
2,754 + -0.0
2,754 + +0.0
2,754 + +0.8
2,754 + -0.9
2,755 - -2.8
2,755 - -2.0
2,808 + -0.8
2,808 + +0.8
2,808 + +0.3
2,808 + -0.3
2,808 + +1.0
2,808 + -0.6
2,809 - -0.8
2,809 - -0.7
2,809 - -0.4
2,809 - +0.3
2,809 - +0.8
2,809 - +2.3
2,929 - AZOBR_RS00070 0.14 -1.7
3,015 + AZOBR_RS00070 0.24 +0.1
3,174 + AZOBR_RS00070 0.42 -0.1
3,174 + AZOBR_RS00070 0.42 +0.7
3,175 - AZOBR_RS00070 0.42 +0.2
3,175 - AZOBR_RS00070 0.42 +0.1
3,175 - AZOBR_RS00070 0.42 +0.3
3,369 + AZOBR_RS00070 0.64 +0.2
3,369 + AZOBR_RS00070 0.64 +0.8
3,487 - AZOBR_RS00070 0.78 +0.2
3,487 - AZOBR_RS00070 0.78 +0.9
3,487 - AZOBR_RS00070 0.78 -0.6
3,645 + +0.1
3,646 - -0.2
3,820 + -1.9
4,054 + AZOBR_RS00075 0.17 +0.1
4,054 + AZOBR_RS00075 0.17 -2.1
4,055 - AZOBR_RS00075 0.17 -1.6
4,055 - AZOBR_RS00075 0.17 +1.1
4,153 + AZOBR_RS00075 0.25 -1.4
4,180 + AZOBR_RS00075 0.27 -0.9
4,180 + AZOBR_RS00075 0.27 -0.6
4,180 + AZOBR_RS00075 0.27 +0.4
4,180 + -2.5
4,180 + AZOBR_RS00075 0.27 -0.3
4,181 - AZOBR_RS00075 0.27 +1.0
4,181 - AZOBR_RS00075 0.27 -0.1

Or see this region's nucleotide sequence