Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS00030

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09010 and AZOBR_RS09015 are separated by 333 nucleotidesAZOBR_RS09015 and AZOBR_RS09020 are separated by 3 nucleotidesAZOBR_RS09020 and AZOBR_RS00030 are separated by 13 nucleotidesAZOBR_RS00030 and AZOBR_RS09025 are separated by 39 nucleotidesAZOBR_RS09025 and AZOBR_RS09030 are separated by 12 nucleotides AZOBR_RS09010: AZOBR_RS09010 - transketolase, at 1,883,908 to 1,885,920 _RS09010 AZOBR_RS09015: AZOBR_RS09015 - hypothetical protein, at 1,886,254 to 1,886,478 _RS09015 AZOBR_RS09020: AZOBR_RS09020 - hypothetical protein, at 1,886,482 to 1,886,796 _RS09020 AZOBR_RS00030: AZOBR_RS00030 - 6S, at 1,886,810 to 1,886,969 _RS00030 AZOBR_RS09025: AZOBR_RS09025 - 5-formyltetrahydrofolate cyclo-ligase, at 1,887,009 to 1,887,617 _RS09025 AZOBR_RS09030: AZOBR_RS09030 - metallophosphoesterase, at 1,887,630 to 1,888,451 _RS09030 Position (kb) 1886 1887Strain fitness (log2 ratio) -3 -2 -1 0 1at 1886.142 kb on + strandat 1886.143 kb on - strandat 1886.195 kb on + strandat 1886.196 kb on - strandat 1886.800 kb on - strandat 1886.800 kb on - strandat 1886.862 kb on - strand, within AZOBR_RS00030at 1887.242 kb on + strandat 1887.242 kb on + strand, within AZOBR_RS09025at 1887.346 kb on - strand, within AZOBR_RS09025at 1887.456 kb on + strand, within AZOBR_RS09025at 1887.459 kb on + strand, within AZOBR_RS09025at 1887.460 kb on - strand, within AZOBR_RS09025at 1887.900 kb on + strand, within AZOBR_RS09030

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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1,886,142 + -0.3
1,886,143 - -1.0
1,886,195 + -0.6
1,886,196 - +0.0
1,886,800 - -0.5
1,886,800 - -3.1
1,886,862 - AZOBR_RS00030 0.33 -1.3
1,887,242 + -0.8
1,887,242 + AZOBR_RS09025 0.38 -1.6
1,887,346 - AZOBR_RS09025 0.55 -1.0
1,887,456 + AZOBR_RS09025 0.73 -1.0
1,887,459 + AZOBR_RS09025 0.74 -3.2
1,887,460 - AZOBR_RS09025 0.74 -1.9
1,887,900 + AZOBR_RS09030 0.33 -1.0

Or see this region's nucleotide sequence