Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS33720

Experiment: 2-pentyl-furan 1.780666667 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS33710 and AZOBR_RS33715 are separated by 100 nucleotidesAZOBR_RS33715 and AZOBR_RS33720 are separated by 308 nucleotidesAZOBR_RS33720 and AZOBR_RS33725 are separated by 35 nucleotides AZOBR_RS33710: AZOBR_RS33710 - putative aminotransferase, at 91,186 to 92,439 _RS33710 AZOBR_RS33715: AZOBR_RS33715 - hypothetical protein, at 92,540 to 92,836 _RS33715 AZOBR_RS33720: AZOBR_RS33720 - UDP-glucose 6-dehydrogenase, at 93,145 to 94,470 _RS33720 AZOBR_RS33725: AZOBR_RS33725 - phosphomannomutase, at 94,506 to 95,912 _RS33725 Position (kb) 93 94 95Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 92.251 kb on + strand, within AZOBR_RS33710at 92.251 kb on + strand, within AZOBR_RS33710at 92.252 kb on - strand, within AZOBR_RS33710at 92.275 kb on + strand, within AZOBR_RS33710at 92.326 kb on + strandat 92.326 kb on + strandat 92.327 kb on - strandat 92.892 kb on + strandat 92.892 kb on + strandat 94.999 kb on - strand, within AZOBR_RS33725

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
remove
92,251 + AZOBR_RS33710 0.85 -1.3
92,251 + AZOBR_RS33710 0.85 -3.6
92,252 - AZOBR_RS33710 0.85 -1.8
92,275 + AZOBR_RS33710 0.87 -1.8
92,326 + -4.4
92,326 + -0.9
92,327 - -3.6
92,892 + -0.9
92,892 + +0.2
94,999 - AZOBR_RS33725 0.35 +0.8

Or see this region's nucleotide sequence