Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS32280

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS32270 and AZOBR_RS32275 are separated by 98 nucleotidesAZOBR_RS32275 and AZOBR_RS32280 are separated by 1 nucleotidesAZOBR_RS32280 and AZOBR_RS32285 are separated by 44 nucleotides AZOBR_RS32270: AZOBR_RS32270 - branched-chain amino acid ABC transporter substrate-binding protein, at 607,477 to 608,613 _RS32270 AZOBR_RS32275: AZOBR_RS32275 - branched-chain amino acid ABC transporter permease, at 608,712 to 609,584 _RS32275 AZOBR_RS32280: AZOBR_RS32280 - branched-chain amino acid ABC transporter permease, at 609,586 to 610,557 _RS32280 AZOBR_RS32285: AZOBR_RS32285 - hypothetical protein, at 610,602 to 612,128 _RS32285 Position (kb) 609 610 611Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 608.764 kb on - strandat 608.764 kb on - strandat 608.839 kb on - strand, within AZOBR_RS32275at 608.877 kb on + strand, within AZOBR_RS32275at 608.877 kb on + strand, within AZOBR_RS32275at 608.878 kb on - strand, within AZOBR_RS32275at 608.878 kb on - strand, within AZOBR_RS32275at 609.343 kb on - strand, within AZOBR_RS32275at 609.343 kb on - strand, within AZOBR_RS32275at 609.343 kb on - strand, within AZOBR_RS32275at 609.480 kb on + strand, within AZOBR_RS32275at 609.661 kb on + strandat 609.661 kb on + strandat 609.661 kb on + strandat 609.661 kb on + strandat 609.662 kb on - strandat 609.662 kb on - strandat 609.662 kb on - strandat 609.662 kb on - strandat 609.662 kb on - strandat 609.695 kb on - strand, within AZOBR_RS32280at 609.733 kb on + strand, within AZOBR_RS32280at 609.734 kb on - strand, within AZOBR_RS32280at 609.734 kb on - strand, within AZOBR_RS32280at 609.734 kb on - strand, within AZOBR_RS32280at 609.734 kb on - strand, within AZOBR_RS32280at 609.910 kb on + strand, within AZOBR_RS32280at 609.910 kb on + strand, within AZOBR_RS32280at 609.910 kb on + strand, within AZOBR_RS32280at 609.911 kb on - strand, within AZOBR_RS32280at 610.093 kb on + strand, within AZOBR_RS32280at 610.093 kb on + strand, within AZOBR_RS32280at 610.094 kb on - strand, within AZOBR_RS32280at 610.160 kb on - strand, within AZOBR_RS32280at 610.252 kb on + strand, within AZOBR_RS32280at 610.252 kb on + strand, within AZOBR_RS32280at 610.252 kb on + strand, within AZOBR_RS32280at 610.261 kb on + strand, within AZOBR_RS32280at 610.261 kb on + strand, within AZOBR_RS32280at 610.261 kb on + strand, within AZOBR_RS32280at 610.261 kb on + strand, within AZOBR_RS32280at 610.261 kb on + strand, within AZOBR_RS32280at 610.261 kb on + strand, within AZOBR_RS32280at 610.261 kb on + strand, within AZOBR_RS32280at 610.262 kb on - strand, within AZOBR_RS32280at 610.262 kb on - strand, within AZOBR_RS32280at 610.262 kb on - strand, within AZOBR_RS32280at 610.262 kb on - strand, within AZOBR_RS32280at 610.262 kb on - strand, within AZOBR_RS32280at 610.262 kb on - strand, within AZOBR_RS32280at 610.262 kb on - strand, within AZOBR_RS32280at 610.262 kb on - strand, within AZOBR_RS32280at 610.396 kb on + strand, within AZOBR_RS32280at 610.397 kb on - strand, within AZOBR_RS32280at 610.397 kb on - strand, within AZOBR_RS32280at 610.553 kb on + strandat 610.554 kb on - strandat 610.755 kb on + strand, within AZOBR_RS32285at 610.908 kb on + strand, within AZOBR_RS32285at 610.908 kb on + strand, within AZOBR_RS32285at 610.908 kb on + strand, within AZOBR_RS32285at 610.908 kb on + strand, within AZOBR_RS32285at 610.908 kb on + strand, within AZOBR_RS32285at 610.908 kb on + strand, within AZOBR_RS32285at 610.908 kb on + strand, within AZOBR_RS32285at 610.909 kb on - strand, within AZOBR_RS32285at 610.909 kb on - strand, within AZOBR_RS32285at 610.909 kb on - strand, within AZOBR_RS32285at 610.909 kb on - strand, within AZOBR_RS32285at 610.909 kb on - strand, within AZOBR_RS32285at 610.909 kb on - strand, within AZOBR_RS32285at 610.909 kb on - strand, within AZOBR_RS32285at 611.343 kb on + strand, within AZOBR_RS32285at 611.344 kb on - strand, within AZOBR_RS32285

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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608,764 - +0.5
608,764 - +0.5
608,839 - AZOBR_RS32275 0.15 -2.8
608,877 + AZOBR_RS32275 0.19 +0.8
608,877 + AZOBR_RS32275 0.19 +1.1
608,878 - AZOBR_RS32275 0.19 -1.9
608,878 - AZOBR_RS32275 0.19 -1.5
609,343 - AZOBR_RS32275 0.72 -0.3
609,343 - AZOBR_RS32275 0.72 +0.3
609,343 - AZOBR_RS32275 0.72 -0.8
609,480 + AZOBR_RS32275 0.88 -0.1
609,661 + -0.9
609,661 + +0.4
609,661 + -1.4
609,661 + +0.9
609,662 - -0.1
609,662 - -0.7
609,662 - -0.3
609,662 - -0.6
609,662 - -1.6
609,695 - AZOBR_RS32280 0.11 +2.2
609,733 + AZOBR_RS32280 0.15 -1.4
609,734 - AZOBR_RS32280 0.15 +0.2
609,734 - AZOBR_RS32280 0.15 +0.7
609,734 - AZOBR_RS32280 0.15 -0.3
609,734 - AZOBR_RS32280 0.15 +0.5
609,910 + AZOBR_RS32280 0.33 -2.2
609,910 + AZOBR_RS32280 0.33 -1.0
609,910 + AZOBR_RS32280 0.33 +2.1
609,911 - AZOBR_RS32280 0.33 +1.2
610,093 + AZOBR_RS32280 0.52 +0.9
610,093 + AZOBR_RS32280 0.52 -3.7
610,094 - AZOBR_RS32280 0.52 +1.2
610,160 - AZOBR_RS32280 0.59 -2.6
610,252 + AZOBR_RS32280 0.69 -1.0
610,252 + AZOBR_RS32280 0.69 -1.5
610,252 + AZOBR_RS32280 0.69 +2.2
610,261 + AZOBR_RS32280 0.69 +2.9
610,261 + AZOBR_RS32280 0.69 -0.6
610,261 + AZOBR_RS32280 0.69 +0.0
610,261 + AZOBR_RS32280 0.69 +0.7
610,261 + AZOBR_RS32280 0.69 -0.1
610,261 + AZOBR_RS32280 0.69 -1.9
610,261 + AZOBR_RS32280 0.69 +0.9
610,262 - AZOBR_RS32280 0.70 -2.1
610,262 - AZOBR_RS32280 0.70 +0.8
610,262 - AZOBR_RS32280 0.70 -0.1
610,262 - AZOBR_RS32280 0.70 +0.8
610,262 - AZOBR_RS32280 0.70 +0.9
610,262 - AZOBR_RS32280 0.70 -1.5
610,262 - AZOBR_RS32280 0.70 +1.0
610,262 - AZOBR_RS32280 0.70 +0.2
610,396 + AZOBR_RS32280 0.83 -2.3
610,397 - AZOBR_RS32280 0.83 -0.2
610,397 - AZOBR_RS32280 0.83 +0.9
610,553 + -0.6
610,554 - -2.3
610,755 + AZOBR_RS32285 0.10 -0.4
610,908 + AZOBR_RS32285 0.20 +0.4
610,908 + AZOBR_RS32285 0.20 -1.5
610,908 + AZOBR_RS32285 0.20 +0.3
610,908 + AZOBR_RS32285 0.20 +0.4
610,908 + AZOBR_RS32285 0.20 +0.2
610,908 + AZOBR_RS32285 0.20 +1.5
610,908 + AZOBR_RS32285 0.20 +0.5
610,909 - AZOBR_RS32285 0.20 -1.9
610,909 - AZOBR_RS32285 0.20 +0.2
610,909 - AZOBR_RS32285 0.20 +0.5
610,909 - AZOBR_RS32285 0.20 +0.9
610,909 - AZOBR_RS32285 0.20 -0.1
610,909 - AZOBR_RS32285 0.20 -0.3
610,909 - AZOBR_RS32285 0.20 -2.2
611,343 + AZOBR_RS32285 0.49 +0.9
611,344 - AZOBR_RS32285 0.49 +0.3

Or see this region's nucleotide sequence